RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 OGDHLQ9ULD0 1010 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 MTMR6Q9Y217 621 aa11.14□□□□□ -0.63
TOPBP1-209ENST00000513818 MEIS1O00470 390 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 CCNT1O60563 726 aaKnown RBP11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 MSCO60682 206 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 STAM2O75886 525 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 KCNA2P16389 499 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 ICAM3P32942 547 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 ANP32AP39687 249 aaKnown RBP11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 ITGB3BPQ13352 177 aaPredicted RBP11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 LRRC41Q15345 812 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 FAM173BQ6P4H8 233 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 CYFIP1Q7L576 1253 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 AFG1LQ8WV93 481 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 AP5M1Q9H0R1 490 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 DDX25Q9UHL0 483 aaKnown RBP11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 MYH15Q9Y2K3 1946 aa11.13□□□□□ -0.63
TOPBP1-209ENST00000513818 MSH4O15457 936 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 STX6O43752 255 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 FARP2O94887 1054 aaPredicted RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 GH1P01241 217 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 U2AF2P26368 475 aaKnown RBP eCLIP11.12□□□□□ -0.632e-6■■□□□ 13.9
TOPBP1-209ENST00000513818 CIITAP33076 1130 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 MCM7P33993 719 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 GJA9P57773 515 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 SETQ01105 290 aaPredicted RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 RESTQ13127 1097 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 FSCN1Q16658 493 aaKnown RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 HSDL1Q3SXM5 330 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 FOXD4L6Q3SYB3 417 aaPredicted RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 CELF3Q5SZQ8 465 aaKnown RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 FOXD4L3Q6VB84 417 aaPredicted RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 DHX37Q8IY37 1157 aaKnown RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 FERMT2Q96AC1 680 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 SPATA33Q96N06 139 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 ZNF577Q9BSK1 485 aa11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 UPF3AQ9H1J1 476 aaKnown RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 RYDENQ9NUL5 291 aaKnown RBP11.12□□□□□ -0.63
TOPBP1-209ENST00000513818 CHMP2AO43633 222 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 MMP3P08254 477 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 MYL3P08590 195 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 ZNF286BP0CG31 522 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 PDCP20941 246 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 TOB1P50616 345 aaPredicted RBP11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 USP11P51784 963 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 CHMP4BP1P59074 171 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 ZNF174Q15697 407 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 GNASQ5JWF2 1037 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 TTC38Q5R3I4 469 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 MYSM1Q5VVJ2 828 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 CXCL17Q6UXB2 119 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 TRIM50Q86XT4 487 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 KLHDC9Q8NEP7 349 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 MBOAT7Q96N66 472 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 FTOQ9C0B1 505 aaKnown RBP eCLIP11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 TMEM60Q9H2L4 133 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 MLXIPQ9HAP2 919 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 PCDH10Q9P2E7 1040 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 NOL7Q9UMY1 257 aaKnown RBP11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 RBM19Q9Y4C8 960 aaKnown RBP11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 PCDHB6Q9Y5E3 794 aa11.11□□□□□ -0.63
TOPBP1-209ENST00000513818 CYP3A7-CYP3A51PA0A087WV96 503 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 KBTBD13C9JR72 458 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 IPO5O00410 1097 aaKnown RBP11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 DNM1LO00429 736 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 NOP56O00567 594 aaKnown RBP11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 NKRFO15226 690 aaKnown RBP eCLIP11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 NEMFO60524 1076 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 CCNE2O96020 404 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 ASGR1P07306 291 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 CYP3A7P24462 503 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 PSMC6P62333 389 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 NEDD9Q14511 834 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 KCNA10Q16322 511 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 Q4G0T1 1027 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 UTP14CQ5TAP6 766 aaKnown RBP11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 KCNV1Q6PIU1 500 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 METTL7BQ6UX53 244 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 NIPA1Q7RTP0 329 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 RNF180Q86T96 592 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 ETNPPLQ8TBG4 499 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 KCNV2Q8TDN2 545 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 PAWRQ96IZ0 340 aaKnown RBP11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 CHAMP1Q96JM3 812 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 CDHR1Q96JP9 859 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 SDF4Q9BRK5 362 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 SPC25Q9HBM1 224 aa11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 JPH1Q9HDC5 661 aaPredicted RBP11.1□□□□□ -0.63
TOPBP1-209ENST00000513818 ALPK3Q96L96 1907 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 A0A1W2PQ45 241 aaPredicted RBP11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 A0A1W2PQY0 241 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 DHX15O43143 795 aaKnown RBP11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 GAS7O60861 476 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 TGFB3P10600 412 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 GCFC2P16383 781 aaKnown RBP11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 CPT1AP50416 773 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 ACLYP53396 1101 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 ATN1P54259 1190 aaPredicted RBP11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 LAMC2Q13753 1193 aa11.09□□□□□ -0.63
TOPBP1-209ENST00000513818 CALCRLQ16602 461 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms