RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 PDE4DQ08499 809 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 AP3B2Q13367 1082 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 SKIV2LQ15477 1246 aaKnown RBP7.98□□□□□ -1.13
LIMD1-204ENST00000474665 CCDC144BQ3MJ40 725 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 ANO1Q5XXA6 986 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 PCNX4Q63HM2 1172 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 GALNT17Q6IS24 598 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 HSCBQ8IWL3 235 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 DIS3L2Q8IYB7 885 aaKnown RBP7.98□□□□□ -1.13
LIMD1-204ENST00000474665 WASF1Q92558 559 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 PBX4Q9BYU1 374 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 GLT8D2Q9H1C3 349 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 VTA1Q9NP79 307 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 PDLIM7Q9NR12 457 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 RTEL1Q9NZ71 1219 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 NRBP1Q9UHY1 535 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 SMC3Q9UQE7 1217 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 GNEQ9Y223 722 aaKnown RBP7.98□□□□□ -1.13
LIMD1-204ENST00000474665 UBIAD1Q9Y5Z9 338 aa7.98□□□□□ -1.13
LIMD1-204ENST00000474665 TCHHQ07283 1943 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 MYADML2A6NDP7 307 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 SPDYE3A6NKU9 549 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 SPATA31C2B4DYI2 1134 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 MEIS1O00470 390 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 SEPT4O43236 478 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 ATP9AO75110 1047 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 EIF3JO75822 258 aaKnown RBP7.97□□□□□ -1.13
LIMD1-204ENST00000474665 SYT1P21579 422 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 U2AF2P26368 475 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIMD1-204ENST00000474665 CCND2P30279 289 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 CIITAP33076 1130 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 TOB1P50616 345 aaPredicted RBP7.97□□□□□ -1.13
LIMD1-204ENST00000474665 PKP1Q13835 747 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 STXBP2Q15833 593 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 INF2Q27J81 1249 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 TRIM60Q495X7 471 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 LARP1BQ659C4 914 aaKnown RBP7.97□□□□□ -1.13
LIMD1-204ENST00000474665 SLC39A5Q6ZMH5 540 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 SEPT14Q6ZU15 432 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 PIK3AP1Q6ZUJ8 805 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 SPRYD3Q8NCJ5 442 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 BICD2Q8TD16 824 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 TBCKQ8TEA7 893 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 COPS5Q92905 334 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 MBOAT7Q96N66 472 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 WDR11Q9BZH6 1224 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 DDX41Q9UJV9 622 aaKnown RBP7.97□□□□□ -1.13
LIMD1-204ENST00000474665 ZHX1Q9UKY1 873 aaPredicted RBP7.97□□□□□ -1.13
LIMD1-204ENST00000474665 CNPY2Q9Y2B0 182 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.97□□□□□ -1.13
LIMD1-204ENST00000474665 TRIP12Q14669 1992 aaPredicted RBP7.97□□□□□ -1.13
LIMD1-204ENST00000474665 SCN10AQ9Y5Y9 1956 aa7.97□□□□□ -1.13
LIMD1-204ENST00000474665 CYP3A7-CYP3A51PA0A087WV96 503 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 DHX15O43143 795 aaKnown RBP7.96□□□□□ -1.14
LIMD1-204ENST00000474665 ADAMTS4O75173 837 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 TDP2O95551 362 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 ARP10275 920 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 CYP3A7P24462 503 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 ICAM3P32942 547 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 DDIT3P35638 169 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 KRT2P35908 639 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 ARHGAP1Q07960 439 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 LY6KQ17RY6 165 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 DUSP28Q4G0W2 176 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 CEP55Q53EZ4 464 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 XRRA1Q6P2D8 792 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 KRT25Q7Z3Z0 450 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 FAM184AQ8NB25 1140 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 GJA10Q969M2 543 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 MXRA8Q9BRK3 442 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 UPF3AQ9H1J1 476 aaKnown RBP7.96□□□□□ -1.14
LIMD1-204ENST00000474665 FOXP1Q9H334 677 aaPredicted RBP7.96□□□□□ -1.14
LIMD1-204ENST00000474665 JADE2Q9NQC1 790 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 DDX20Q9UHI6 824 aaKnown RBP7.96□□□□□ -1.14
LIMD1-204ENST00000474665 MTMR6Q9Y217 621 aa7.96□□□□□ -1.14
LIMD1-204ENST00000474665 MYH9P35579 1960 aaKnown RBP7.95□□□□□ -1.14
LIMD1-204ENST00000474665 SLC37A4O43826 429 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 DUSP11O75319 330 aaKnown RBP7.95□□□□□ -1.14
LIMD1-204ENST00000474665 PGK1P00558 417 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 TXNP10599 105 aaKnown RBP7.95□□□□□ -1.14
LIMD1-204ENST00000474665 AKR1A1P14550 325 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 KCNA2P16389 499 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 XBP1P17861 261 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 UBA1P22314 1058 aaKnown RBP7.95□□□□□ -1.14
LIMD1-204ENST00000474665 CNGA1P29973 690 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 USP11P51784 963 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 NKX3-2P78367 333 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 TNFAIP2Q03169 654 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 ITGB3BPQ13352 177 aaPredicted RBP7.95□□□□□ -1.14
LIMD1-204ENST00000474665 NBR1Q14596 966 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 NONOQ15233 471 aaKnown RBP eCLIP7.95□□□□□ -1.14
LIMD1-204ENST00000474665 IQSEC1Q6DN90 963 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 CCSAPQ6IQ19 270 aaPredicted RBP7.95□□□□□ -1.14
LIMD1-204ENST00000474665 NOSTRINQ8IVI9 506 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 KLHDC9Q8NEP7 349 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 SCFD2Q8WU76 684 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 GPRASP2Q96D09 838 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 KCNH7Q9NS40 1196 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 FAM184BQ9ULE4 1060 aa7.95□□□□□ -1.14
LIMD1-204ENST00000474665 ZDHHC9Q9Y397 364 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms