RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 IL17RAQ96F46 866 aa16.84■□□□□ 0.29
SMC1A-204ENST00000463684 NEDD4P46934 1319 aa16.84■□□□□ 0.29
SMC1A-204ENST00000463684 CCDC171Q6TFL3 1326 aa16.84■□□□□ 0.29
SMC1A-204ENST00000463684 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.83■□□□□ 0.28
SMC1A-204ENST00000463684 TRIM6-TRIM34B2RNG4 842 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 KDM4AO75164 1064 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 RB1P06400 928 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 CTSHP09668 335 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 CTNNB1P35222 781 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 PDE1AP54750 535 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 SP2Q02086 613 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 SMAD2Q15796 467 aaKnown RBP16.83■□□□□ 0.28
SMC1A-204ENST00000463684 SAMD3Q8N6K7 520 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 ANKS1AQ92625 1134 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 ZSCAN10Q96SZ4 725 aaPredicted RBP16.83■□□□□ 0.28
SMC1A-204ENST00000463684 C11orf84Q9BUA3 381 aaPredicted RBP16.83■□□□□ 0.28
SMC1A-204ENST00000463684 LMAN2LQ9H0V9 348 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 RNPEPQ9H4A4 650 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 RWDD3Q9Y3V2 267 aa16.83■□□□□ 0.28
SMC1A-204ENST00000463684 BRWD1Q9NSI6 2320 aa16.82■□□□□ 0.28
SMC1A-204ENST00000463684 NOP56O00567 594 aaKnown RBP16.82■□□□□ 0.28
SMC1A-204ENST00000463684 UBA1P22314 1058 aaKnown RBP16.82■□□□□ 0.28
SMC1A-204ENST00000463684 CCND2P30279 289 aa16.82■□□□□ 0.28
SMC1A-204ENST00000463684 LTBRP36941 435 aa16.82■□□□□ 0.28
SMC1A-204ENST00000463684 PGM5Q15124 567 aa16.82■□□□□ 0.28
SMC1A-204ENST00000463684 USP26Q9BXU7 913 aa16.82■□□□□ 0.28
SMC1A-204ENST00000463684 C5orf67F2Z3F1 127 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 LGALS2P05162 132 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 HOXA13P31271 388 aaPredicted RBP16.81■□□□□ 0.28
SMC1A-204ENST00000463684 HOXC8P31273 242 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 BMPR1AP36894 532 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 GHRHRQ02643 423 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 CLUL1Q15846 466 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 CTC1Q2NKJ3 1217 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 HERC4Q5GLZ8 1057 aaPredicted RBP16.81■□□□□ 0.28
SMC1A-204ENST00000463684 RILPL2Q969X0 211 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 SETD4Q9NVD3 440 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 MUTYHQ9UIF7 546 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 PCDHA1Q9Y5I3 950 aa16.81■□□□□ 0.28
SMC1A-204ENST00000463684 B4E1Z4 1266 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 OPLAHO14841 1288 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 MBTPS2O43462 519 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 HYAL1Q12794 435 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 TRAF1Q13077 416 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 RNF135Q8IUD6 432 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 ENAHQ8N8S7 591 aaPredicted RBP16.8■□□□□ 0.28
SMC1A-204ENST00000463684 OSBPL7Q9BZF2 842 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 IGFLR1Q9H665 355 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 ZSWIM5Q9P217 1185 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 KIAA1217Q5T5P2 1943 aa16.8■□□□□ 0.28
SMC1A-204ENST00000463684 KLRF2D3W0D1 207 aa16.79■□□□□ 0.28
SMC1A-204ENST00000463684 GCOM1H8Y6P7 765 aaPredicted RBP16.79■□□□□ 0.28
SMC1A-204ENST00000463684 ZBTB5O15062 677 aa16.79■□□□□ 0.28
SMC1A-204ENST00000463684 GRM6O15303 877 aa16.79■□□□□ 0.28
SMC1A-204ENST00000463684 POLR2MP0CAP2 368 aa16.79■□□□□ 0.28
SMC1A-204ENST00000463684 GNPTABQ3T906 1256 aa16.79■□□□□ 0.28
SMC1A-204ENST00000463684 DIEXFQ68CQ4 756 aaKnown RBP16.79■□□□□ 0.28
SMC1A-204ENST00000463684 FCHSD1Q86WN1 690 aa16.79■□□□□ 0.28
SMC1A-204ENST00000463684 ZFP91Q96JP5 570 aaPredicted RBP16.79■□□□□ 0.28
SMC1A-204ENST00000463684 UBAC1Q9BSL1 405 aa16.79■□□□□ 0.28
SMC1A-204ENST00000463684 WDFY4Q6ZS81 3184 aa16.79■□□□□ 0.28
SMC1A-204ENST00000463684 STXBP3O00186 592 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 DLX2Q07687 328 aaPredicted RBP16.78■□□□□ 0.28
SMC1A-204ENST00000463684 SMAD4Q13485 552 aaKnown RBP16.78■□□□□ 0.28
SMC1A-204ENST00000463684 NEDD9Q14511 834 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 FAM26DQ5JW98 314 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 IFIT1BQ5T764 474 aaKnown RBP16.78■□□□□ 0.28
SMC1A-204ENST00000463684 STAG2Q8N3U4 1231 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 IL31RAQ8NI17 732 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 EDAQ92838 391 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 GPKOWQ92917 476 aaPredicted RBP eCLIP16.78■□□□□ 0.281e-6■□□□□ 10.4
SMC1A-204ENST00000463684 KRT23Q9C075 422 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 CD207Q9UJ71 328 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 ZNF215Q9UL58 517 aaPredicted RBP16.78■□□□□ 0.28
SMC1A-204ENST00000463684 COL4A6Q14031 1691 aa16.78■□□□□ 0.28
SMC1A-204ENST00000463684 SDSP20132 328 aa16.77■□□□□ 0.28
SMC1A-204ENST00000463684 ARHGAP4P98171 946 aa16.77■□□□□ 0.28
SMC1A-204ENST00000463684 BTG3Q14201 252 aaPredicted RBP16.77■□□□□ 0.28
SMC1A-204ENST00000463684 METTL7BQ6UX53 244 aa16.77■□□□□ 0.28
SMC1A-204ENST00000463684 CYFIP1Q7L576 1253 aa16.77■□□□□ 0.28
SMC1A-204ENST00000463684 PPP2R3CQ969Q6 453 aa16.77■□□□□ 0.28
SMC1A-204ENST00000463684 PRRX2Q99811 253 aa16.77■□□□□ 0.28
SMC1A-204ENST00000463684 BCAS3Q9H6U6 928 aa16.77■□□□□ 0.28
SMC1A-204ENST00000463684 MICAL3Q7RTP6 2002 aa16.77■□□□□ 0.27
SMC1A-204ENST00000463684 ADGRA3Q8IWK6 1321 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 PPP1R11O60927 126 aaPredicted RBP16.76■□□□□ 0.27
SMC1A-204ENST00000463684 STAM2O75886 525 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 CSPG5O95196 566 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 PTPN5P54829 565 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 ADAM15Q13444 863 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 PKN1Q16512 942 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 IMMTQ16891 758 aaKnown RBP16.76■□□□□ 0.27
SMC1A-204ENST00000463684 UTP14CQ5TAP6 766 aaKnown RBP16.76■□□□□ 0.27
SMC1A-204ENST00000463684 BMP8AQ7Z5Y6 402 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 RSPH3Q86UC2 560 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 HOMER1Q86YM7 354 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 CLP1Q92989 425 aaKnown RBP16.76■□□□□ 0.27
SMC1A-204ENST00000463684 PBXIP1Q96AQ6 731 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 MTMR8Q96EF0 704 aa16.76■□□□□ 0.27
SMC1A-204ENST00000463684 SNX27Q96L92 541 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms