RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 COL20A1Q9P218 1284 aa9.95□□□□□ -0.82
COL28A1-205ENST00000453441 PCDHA6Q9UN73 950 aa9.95□□□□□ -0.82
COL28A1-205ENST00000453441 PCDHA8Q9Y5H6 950 aa9.95□□□□□ -0.82
COL28A1-205ENST00000453441 MCM3APO60318 1980 aa9.95□□□□□ -0.82
COL28A1-205ENST00000453441 LRRC37A2A6NM11 1700 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 ASTN1O14525 1302 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 RBM47A0AV96 593 aaKnown RBP9.94□□□□□ -0.82
COL28A1-205ENST00000453441 NKRFO15226 690 aaKnown RBP eCLIP9.94□□□□□ -0.82
COL28A1-205ENST00000453441 MAFGO15525 162 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 SNAI1O95863 264 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-205ENST00000453441 ADH1BP00325 375 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 GJB1P08034 283 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 CYP2C19P33261 490 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 KRT2P35908 639 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 SREBF1P36956 1147 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 ACVR2BQ13705 512 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 PGM5Q15124 567 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 USP17L6PQ6QN14 398 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 KRT25Q7Z3Z0 450 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 VSIG10LQ86VR7 867 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 BLIDQ8IZY5 108 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 SCFD2Q8WU76 684 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 NAP1L4Q99733 375 aaKnown RBP9.94□□□□□ -0.82
COL28A1-205ENST00000453441 ANO3Q9BYT9 981 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.94□□□□□ -0.82
COL28A1-205ENST00000453441 PAK6Q9NQU5 681 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-205ENST00000453441 FAM184BQ9ULE4 1060 aa9.94□□□□□ -0.82
COL28A1-205ENST00000453441 KIAA0100Q14667 2235 aaKnown RBP9.94□□□□□ -0.82
COL28A1-205ENST00000453441 MMP1P03956 469 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 HSP90AA1P07900 732 aaKnown RBP9.93□□□□□ -0.82
COL28A1-205ENST00000453441 CYP3A4P08684 503 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 ZNF865P0CJ78 1059 aaPredicted RBP9.93□□□□□ -0.82
COL28A1-205ENST00000453441 TGFB3P10600 412 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 CCL5P13501 91 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 EIF2AK2P19525 551 aaKnown RBP9.93□□□□□ -0.82
COL28A1-205ENST00000453441 TTLL4Q14679 1199 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 UBE2SQ16763 222 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 IQSEC1Q6DN90 963 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 NIPA1Q7RTP0 329 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 NLRX1Q86UT6 975 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 PARP9Q8IXQ6 854 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 GIMAP8Q8ND71 665 aaPredicted RBP9.93□□□□□ -0.82
COL28A1-205ENST00000453441 FBXO18Q8NFZ0 1043 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 GPRASP2Q96D09 838 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 ABHD8Q96I13 439 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 KATNBL1Q9H079 304 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 RNF208Q9H0X6 261 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 DDX20Q9UHI6 824 aaKnown RBP9.93□□□□□ -0.82
COL28A1-205ENST00000453441 ZHX1Q9UKY1 873 aaPredicted RBP9.93□□□□□ -0.82
COL28A1-205ENST00000453441 SLC27A5Q9Y2P5 690 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 Q9Y3F1 56 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 KIAA1217Q5T5P2 1943 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 HTTP42858 3142 aa9.93□□□□□ -0.82
COL28A1-205ENST00000453441 CCDC194A0A1B0GVG4 234 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 M0R2N6 131 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 FIBPO43427 364 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 TLL1O43897 1013 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 PPFIA3O75145 1194 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 DUSP11O75319 330 aaKnown RBP9.92□□□□□ -0.82
COL28A1-205ENST00000453441 RARBP10826 455 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 GJB2P29033 226 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 ICAM3P32942 547 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 USP11P51784 963 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 ARHGAP4P98171 946 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 SETQ01105 290 aaPredicted RBP9.92□□□□□ -0.82
COL28A1-205ENST00000453441 NONOQ15233 471 aaKnown RBP eCLIP9.92□□□□□ -0.82
COL28A1-205ENST00000453441 CCDC144BQ3MJ40 725 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 JAKMIP3Q5VZ66 844 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 KRT40Q6A162 431 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 MOXD1Q6UVY6 613 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 ANKLE1Q8NAG6 615 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 AIFM3Q96NN9 605 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 INPP4AQ96PE3 977 aaPredicted RBP9.92□□□□□ -0.82
COL28A1-205ENST00000453441 PURBQ96QR8 312 aaKnown RBP9.92□□□□□ -0.82
COL28A1-205ENST00000453441 SPSB2Q99619 263 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 UNC93B1Q9H1C4 597 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 FOXP1Q9H334 677 aaPredicted RBP9.92□□□□□ -0.82
COL28A1-205ENST00000453441 SPC25Q9HBM1 224 aa9.92□□□□□ -0.82
COL28A1-205ENST00000453441 H3BQV1 296 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 MYCLP12524 364 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-205ENST00000453441 GCFC2P16383 781 aaKnown RBP9.91□□□□□ -0.82
COL28A1-205ENST00000453441 CNGA1P29973 690 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 CCND3P30281 292 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-205ENST00000453441 CIITAP33076 1130 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 GJA8P48165 433 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 NKX3-2P78367 333 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 TNFAIP2Q03169 654 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 TRIM32Q13049 653 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 ORC2Q13416 577 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-205ENST00000453441 NPY5RQ15761 445 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 DUSP28Q4G0W2 176 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 CEP55Q53EZ4 464 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 BRDTQ58F21 947 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-205ENST00000453441 TAPT1Q6NXT6 567 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 FBXO16Q8IX29 292 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-205ENST00000453441 DIS3L2Q8IYB7 885 aaKnown RBP9.91□□□□□ -0.82
COL28A1-205ENST00000453441 ARRDC4Q8NCT1 418 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 TRPV1Q8NER1 839 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 CRYGNQ8WXF5 182 aa9.91□□□□□ -0.82
COL28A1-205ENST00000453441 SHISA4Q96DD7 197 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms