RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 NEDD9Q14511 834 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 CCDC96Q2M329 555 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 OSBPL9Q96SU4 736 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 KLC4Q9NSK0 619 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 MCM8Q9UJA3 840 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 HDAC9Q9UKV0 1011 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 CLEC11AQ9Y240 323 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 CAPN6Q9Y6Q1 641 aa9.47□□□□□ -0.89
HPS4-206ENST00000439453 hCG_1642624A0A1W2PR95 340 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 CLRN2A0PK11 232 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 KRT14P02533 472 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 KLK7P49862 253 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 SMTNP53814 917 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 DLGAP5Q15398 846 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 SPA17Q15506 151 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 PTGISQ16647 500 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 PREPLQ4J6C6 727 aaPredicted RBP9.46□□□□□ -0.89
HPS4-206ENST00000439453 CCDC181Q5TID7 509 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 ARMT1Q9H993 441 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 POLD4Q9HCU8 107 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 EXOC1Q9NV70 894 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 SMARCAL1Q9NZC9 954 aa9.46□□□□□ -0.89
HPS4-206ENST00000439453 ZNF263O14978 683 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 USO1O60763 962 aaKnown RBP9.46□□□□□ -0.9
HPS4-206ENST00000439453 FKBP15Q5T1M5 1219 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 CFAP58Q5T655 872 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 CDC42EP5Q6NZY7 148 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 NFRKBQ6P4R8 1299 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 KRT26Q7Z3Y9 468 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 RETREG2Q8NC44 543 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 TEKT1Q969V4 418 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 CDCA5Q96FF9 252 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 TRIM47Q96LD4 638 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 CCDC43Q96MW1 224 aaKnown RBP9.46□□□□□ -0.9
HPS4-206ENST00000439453 MLXIPQ9HAP2 919 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 HYOU1Q9Y4L1 999 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 GSG1L2A8MUP6 293 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 PPP1R37O75864 691 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 TCP1P17987 556 aaKnown RBP9.46□□□□□ -0.9
HPS4-206ENST00000439453 CACNB3P54284 484 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 APBA1Q02410 837 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 CCDC40Q4G0X9 1142 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 EMC10Q5UCC4 262 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 PRAMEF18Q5VWM3 479 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 C8orf74Q6P047 294 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 EP400NLQ6ZTU2 488 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 IQCKQ8N0W5 287 aa9.46□□□□□ -0.9
HPS4-206ENST00000439453 GPR75-ASB3A0A0A6YYF3 556 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 ZNF233A6NK53 670 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 RASSF9O75901 435 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 MOCS3O95396 460 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 MYCNP04198 464 aaPredicted RBP9.45□□□□□ -0.9
HPS4-206ENST00000439453 CDK17Q00537 523 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 NFIAQ12857 509 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 PLCB4Q15147 1175 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 IL17AQ16552 155 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 NLRP14Q86W24 1093 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 TNFRSF25Q93038 417 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 CCDC42Q96M95 316 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 PCMTD1Q96MG8 357 aaPredicted RBP9.45□□□□□ -0.9
HPS4-206ENST00000439453 CCT8L2Q96SF2 557 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 PSMB7Q99436 277 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 MTA3Q9BTC8 594 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 SH2D4AQ9H788 454 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 EHD2Q9NZN4 543 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 FAM198AQ9UFP1 575 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 COL2A1P02458 1487 aaPredicted RBP9.45□□□□□ -0.9
HPS4-206ENST00000439453 PRKAB2O43741 272 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 NR1D1P20393 614 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 CXCR5P32302 372 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 ELF1P32519 619 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 PAFAH1B1P43034 410 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 TDO2P48775 406 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 TBC1D8BQ0IIM8 1120 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 IFT88Q13099 833 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 CCDC13Q8IYE1 715 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 MAGEB6Q8N7X4 407 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 MYCBPAPQ8TBZ2 947 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 TUBGCP2Q9BSJ2 902 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 UBAC1Q9BSL1 405 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 DDX4Q9NQI0 724 aaKnown RBP9.45□□□□□ -0.9
HPS4-206ENST00000439453 ABCF2Q9UG63 623 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 GGA2Q9UJY4 613 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 V9GY48 417 aaPredicted RBP9.45□□□□□ -0.9
HPS4-206ENST00000439453 GREB1LQ9C091 1923 aaPredicted RBP9.45□□□□□ -0.9
HPS4-206ENST00000439453 PRPF3O43395 683 aaKnown RBP9.45□□□□□ -0.9
HPS4-206ENST00000439453 SEC24CP53992 1094 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 ZFPM1Q8IX07 1006 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 IFT20Q8IY31 132 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 IFIH1Q9BYX4 1025 aaKnown RBP9.45□□□□□ -0.9
HPS4-206ENST00000439453 CREBZFQ9NS37 354 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 PCDHA13Q9Y5I0 950 aa9.45□□□□□ -0.9
HPS4-206ENST00000439453 NF2P35240 595 aa9.44□□□□□ -0.9
HPS4-206ENST00000439453 MDH1P40925 334 aaKnown RBP9.44□□□□□ -0.9
HPS4-206ENST00000439453 PPP2R5BQ15173 497 aa9.44□□□□□ -0.9
HPS4-206ENST00000439453 GLE1Q53GS7 698 aaKnown RBP9.44□□□□□ -0.9
HPS4-206ENST00000439453 SH3BP5LQ7L8J4 393 aa9.44□□□□□ -0.9
HPS4-206ENST00000439453 DCPSQ96C86 337 aaKnown RBP9.44□□□□□ -0.9
HPS4-206ENST00000439453 CENPHQ9H3R5 247 aa9.44□□□□□ -0.9
HPS4-206ENST00000439453 SLC40A1Q9NP59 571 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms