RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TMC4Q7Z404 712 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 MMGT1Q8N4V1 131 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 CRAMP1Q96RY5 1269 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 COA1Q9GZY4 146 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 NT5C3AQ9H0P0 336 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 HYOU1Q9Y4L1 999 aa13.05□□□□□ -0.32
CD44-209ENST00000433892 MYH7BA7E2Y1 1941 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 FOCADQ5VW36 1801 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 TLR2O60603 784 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 GCFC2P16383 781 aaKnown RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 TCP1P17987 556 aaKnown RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 STAT3P40763 770 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 POLR2FP61218 127 aaKnown RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 NFIAQ12857 509 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 CCDC181Q5TID7 509 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 CDC42EP5Q6NZY7 148 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 GPBP1Q86WP2 473 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 LSM14BQ9BX40 385 aaKnown RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 ZHX3Q9H4I2 956 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 ATF5Q9Y2D1 282 aaPredicted RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 PCDHA2Q9Y5H9 948 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 SSU72P8A0A1W2PR75 194 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 TULP2O00295 520 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 PJA2O43164 708 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 PRPF6O94906 941 aaKnown RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 IRX5P78411 483 aaPredicted RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 ARID5AQ03989 594 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 MAPK8IP2Q13387 824 aaPredicted RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 SHROOM1Q2M3G4 852 aaPredicted RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 SLC9C1Q4G0N8 1177 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 HYIQ5T013 277 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 FOXR2Q6PJQ5 311 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 ZNF572Q7Z3I7 529 aaPredicted RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 ZFPM1Q8IX07 1006 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 CCDC65Q8IXS2 484 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 NOX5Q96PH1 765 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 TLR10Q9BXR5 811 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 EDEM3Q9BZQ6 932 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 ZC3H12CQ9C0D7 883 aaKnown RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 CWC15Q9P013 229 aaKnown RBP13.04□□□□□ -0.32
CD44-209ENST00000433892 CEP72Q9P209 647 aa13.04□□□□□ -0.32
CD44-209ENST00000433892 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.04□□□□□ -0.32
CD44-209ENST00000433892 KDM3AQ9Y4C1 1321 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 FAM196BA6NMK8 535 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 AGPSO00116 658 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 ENOX2Q16206 610 aaKnown RBP13.03□□□□□ -0.32
CD44-209ENST00000433892 QRICH1Q2TAL8 776 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 KLHDC7AQ5VTJ3 777 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 SFMBT2Q5VUG0 894 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 SP8Q8IXZ3 490 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 AENQ8WTP8 325 aaKnown RBP13.03□□□□□ -0.32
CD44-209ENST00000433892 SCFD1Q8WVM8 642 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 MS4A14Q96JA4 679 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 FAM184BQ9ULE4 1060 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 PCDHA1Q9Y5I3 950 aa13.03□□□□□ -0.32
CD44-209ENST00000433892 POLRMTO00411 1230 aaKnown RBP13.02□□□□□ -0.32
CD44-209ENST00000433892 MED24O75448 989 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 SERPING1P05155 500 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 KRT18P05783 430 aaKnown RBP13.02□□□□□ -0.32
CD44-209ENST00000433892 HLA-DOAP06340 250 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 CYP11B2P19099 503 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 HOXA7P31268 230 aaPredicted RBP13.02□□□□□ -0.32
CD44-209ENST00000433892 DNA2P51530 1060 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 ITIH3Q06033 890 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 FOXR1Q6PIV2 292 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 TRIM59Q8IWR1 403 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 GOLGA6L1Q8N7Z2 621 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 AFAP1L1Q8TED9 768 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 ZFP91Q96JP5 570 aaPredicted RBP13.02□□□□□ -0.32
CD44-209ENST00000433892 CEP63Q96MT8 703 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 TRIM34Q9BYJ4 488 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 EMILIN3Q9NT22 766 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 SUGT1Q9Y2Z0 365 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 THSD7AQ9UPZ6 1657 aa13.02□□□□□ -0.32
CD44-209ENST00000433892 POTEFA5A3E0 1075 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 POTEIP0CG38 1075 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 PAFAH1B1P43034 410 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 CACNB3P54284 484 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 ADAM9Q13443 819 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 ARSHQ5FYA8 562 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 APOBEC3HQ6NTF7 200 aaKnown RBP13.02□□□□□ -0.33
CD44-209ENST00000433892 POTEGQ6S5H5 508 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 POTEEQ6S8J3 1075 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 SND1Q7KZF4 910 aaKnown RBP eCLIP13.02□□□□□ -0.33
CD44-209ENST00000433892 TBC1D5Q92609 795 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 KCTD10Q9H3F6 313 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 KCNMB3Q9NPA1 279 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 LCMT1Q9UIC8 334 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 ATP6V0A2Q9Y487 856 aa13.02□□□□□ -0.33
CD44-209ENST00000433892 GOLGA6BA6NDN3 693 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 RBAK-RBAKDNI3L0D1 243 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 GNA14O95837 355 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 SNAP25P60880 206 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 TCP10Q12799 353 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 RAPGEF1Q13905 1077 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 RNF10Q8N5U6 811 aaKnown RBP13.01□□□□□ -0.33
CD44-209ENST00000433892 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.01□□□□□ -0.33
CD44-209ENST00000433892 ANO3Q9BYT9 981 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 NUCKS1Q9H1E3 243 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms