RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 HLA-DOAP06340 250 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 PLEKP08567 350 aaPredicted RBP15.09■□□□□ 0.01
COL6A3-207ENST00000433762 EPHB4P54760 987 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 SFMBT2Q5VUG0 894 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 KRT26Q7Z3Y9 468 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 KCNK18Q7Z418 384 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 DCAF4Q8WV16 495 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 HPS3Q969F9 1004 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 CAVIN3Q969G5 261 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 MKL1Q969V6 931 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 GPR101Q96P66 508 aaPredicted RBP15.09■□□□□ 0.01
COL6A3-207ENST00000433762 PSTPIP2Q9H939 334 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 AIPL1Q9NZN9 384 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 TFR2Q9UP52 801 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 SHMT1P34896 483 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 TNNT3P45378 269 aaPredicted RBP15.09■□□□□ 0.01
COL6A3-207ENST00000433762 RAD51AP2Q09MP3 1159 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 HAUS3Q68CZ6 603 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 LRRC47Q8N1G4 583 aaKnown RBP15.09■□□□□ 0.01
COL6A3-207ENST00000433762 NUDT12Q9BQG2 462 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 MXD3Q9BW11 206 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 MRIQ9BWK5 157 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 FAM204AQ9H8W3 233 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 ATP6V0A2Q9Y487 856 aa15.09■□□□□ 0.01
COL6A3-207ENST00000433762 SIPA1L1O43166 1804 aa15.08■□□□□ 0
COL6A3-207ENST00000433762 ANKRD31Q8N7Z5 1873 aa15.08■□□□□ 0
COL6A3-207ENST00000433762 A0A0U1RQG5 324 aaPredicted RBP15.08■□□□□ 0
COL6A3-207ENST00000433762 SHOX2O60902 331 aaPredicted RBP15.08■□□□□ 0
COL6A3-207ENST00000433762 PPP1R11O60927 126 aaPredicted RBP15.08■□□□□ 0
COL6A3-207ENST00000433762 CCDC40Q4G0X9 1142 aa15.08■□□□□ 0
COL6A3-207ENST00000433762 ALS2CLQ60I27 953 aa15.08■□□□□ 0
COL6A3-207ENST00000433762 GBP6Q6ZN66 633 aa15.08■□□□□ 0
COL6A3-207ENST00000433762 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.08■□□□□ 0
COL6A3-207ENST00000433762 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.07■□□□□ 0
COL6A3-207ENST00000433762 TRAF5O00463 557 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 ZNF185O15231 689 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 MOCS3O95396 460 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 EPB41P11171 864 aaKnown RBP15.07■□□□□ 0
COL6A3-207ENST00000433762 GYS2P54840 703 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 FAM83BQ5T0W9 1011 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 EIF1ADQ8N9N8 165 aaKnown RBP15.07■□□□□ 0
COL6A3-207ENST00000433762 TLR10Q9BXR5 811 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 KCTD10Q9H3F6 313 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 GPCPD1Q9NPB8 672 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 PLCB1Q9NQ66 1216 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 STIM2Q9P246 746 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 PCDHGC5Q9Y5F6 944 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 BZW2Q9Y6E2 419 aaKnown RBP15.07■□□□□ 0
COL6A3-207ENST00000433762 NKRFO15226 690 aaKnown RBP eCLIP15.07■□□□□ 0
COL6A3-207ENST00000433762 NPM3O75607 178 aaKnown RBP15.07■□□□□ 0
COL6A3-207ENST00000433762 NOL4O94818 638 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 APBA1Q02410 837 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 C2orf54Q08AI8 447 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 NAB2Q15742 525 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 SLC18A3Q16572 532 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 CFAP221Q4G0U5 840 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 SLC27A3Q5K4L6 730 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 CCDC181Q5TID7 509 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 CRYGNQ8WXF5 182 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 EEF2KMTQ96G04 330 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 SH3GL2Q99962 352 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 MLXIPQ9HAP2 919 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 NYAP2Q9P242 653 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 FBXL5Q9UKA1 691 aa15.07■□□□□ 0
COL6A3-207ENST00000433762 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.07■□□□□ 0
COL6A3-207ENST00000433762 GOLGA8KD6RF30 607 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 OPA1O60313 960 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 PLA2G4BP0C869 781 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 ECM1Q16610 540 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 KLHDC7AQ5VTJ3 777 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 ERMNQ8TAM6 284 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 TRAF3IP3Q9Y228 551 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 GOLGA6BA6NDN3 693 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 MARCH6O60337 910 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 GTF2IP78347 998 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 FRMD5Q7Z6J6 570 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 TANGO6Q9C0B7 1094 aa15.06■□□□□ 0
COL6A3-207ENST00000433762 DHX36Q9H2U1 1008 aaKnown RBP15.06■□□□□ 0
COL6A3-207ENST00000433762 C6orf229H3BNL8 230 aa15.05■□□□□ 0
COL6A3-207ENST00000433762 PPEF1O14829 653 aaPredicted RBP15.05■□□□□ 0
COL6A3-207ENST00000433762 FOSP01100 380 aaPredicted RBP15.05■□□□□ 0
COL6A3-207ENST00000433762 CYP11B2P19099 503 aa15.05■□□□□ 0
COL6A3-207ENST00000433762 FKBP1AP62942 108 aaKnown RBP15.05■□□□□ 0
COL6A3-207ENST00000433762 PPFIA1Q13136 1202 aa15.05■□□□□ 0
COL6A3-207ENST00000433762 UBE2SQ16763 222 aa15.05■□□□□ 0
COL6A3-207ENST00000433762 Q4G0T1 1027 aa15.05■□□□□ 0
COL6A3-207ENST00000433762 SLC51AQ86UW1 340 aa15.05■□□□□ 0
COL6A3-207ENST00000433762 GANQ9H2C0 597 aa15.05■□□□□ 0
COL6A3-207ENST00000433762 DDX4Q9NQI0 724 aaKnown RBP15.05■□□□□ 0
COL6A3-207ENST00000433762 SYNPO2Q9UMS6 1093 aa15.05■□□□□ 0
COL6A3-207ENST00000433762 AGPSO00116 658 aa15.05■□□□□ -0
COL6A3-207ENST00000433762 CETN3O15182 167 aa15.05■□□□□ -0
COL6A3-207ENST00000433762 MMP14P50281 582 aa15.05■□□□□ -0
COL6A3-207ENST00000433762 SLC12A3P55017 1021 aa15.05■□□□□ -0
COL6A3-207ENST00000433762 IFI16Q16666 785 aaKnown RBP15.05■□□□□ -0
COL6A3-207ENST00000433762 BMT2Q1RMZ1 405 aa15.05■□□□□ -0
COL6A3-207ENST00000433762 GPBP1Q86WP2 473 aa15.05■□□□□ -0
COL6A3-207ENST00000433762 C1orf131Q8NDD1 294 aaKnown RBP15.05■□□□□ -0
COL6A3-207ENST00000433762 SCFD1Q8WVM8 642 aa15.05■□□□□ -0
COL6A3-207ENST00000433762 ANO3Q9BYT9 981 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms