RNA–Protein interactions for RNA: ENST00000420121.5

SSBP3-206, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-206ENST00000420121 C7orf31Q8N865 590 aa12.71□□□□□ -0.37
SSBP3-206ENST00000420121 MAFAQ8NHW3 353 aaPredicted RBP12.71□□□□□ -0.37
SSBP3-206ENST00000420121 AFAP1L1Q8TED9 768 aa12.71□□□□□ -0.37
SSBP3-206ENST00000420121 CCDC136Q96JN2 1154 aa12.71□□□□□ -0.37
SSBP3-206ENST00000420121 GPR20Q99678 358 aa12.71□□□□□ -0.37
SSBP3-206ENST00000420121 MTIF3Q9H2K0 278 aaKnown RBP12.71□□□□□ -0.37
SSBP3-206ENST00000420121 NKX2-4Q9H2Z4 354 aa12.71□□□□□ -0.37
SSBP3-206ENST00000420121 PSTPIP2Q9H939 334 aa12.71□□□□□ -0.37
SSBP3-206ENST00000420121 SLC4A7Q9Y6M7 1214 aa12.71□□□□□ -0.37
SSBP3-206ENST00000420121 SPTBN5Q9NRC6 3674 aaKnown RBP12.7□□□□□ -0.38
SSBP3-206ENST00000420121 NBNO60934 754 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 ATP9AO75110 1047 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 CXCL10P02778 98 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 CKBP12277 381 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 FOSL2P15408 326 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 SELPP16109 830 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 ITGB5P18084 799 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 HSPA4P34932 840 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 PTK7Q13308 1070 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 MBTPS1Q14703 1052 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 RAB30Q15771 203 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 XRRA1Q6P2D8 792 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 CYFIP1Q7L576 1253 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 RETREG2Q8NC44 543 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 CUL5Q93034 780 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 SENP7Q9BQF6 1050 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 MLXIPQ9HAP2 919 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 NOD1Q9Y239 953 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 SNX14Q9Y5W7 946 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 UBIAD1Q9Y5Z9 338 aa12.7□□□□□ -0.38
SSBP3-206ENST00000420121 NID2Q14112 1375 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 WDR81Q562E7 1941 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 KLF18A0A0U1RQI7 1052 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 ZBBXA8MT70 800 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 H3BRB1 525 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 ZBTB43O43298 467 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 KCNA2P16389 499 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 ATP2A2P16615 1042 aaKnown RBP12.69□□□□□ -0.38
SSBP3-206ENST00000420121 RCAN1P53805 252 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 ADGRE1Q14246 886 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 NEDD9Q14511 834 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 KRT32Q14532 448 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 RTN1Q16799 776 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 LRRC8DQ7L1W4 858 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 HEATR3Q7Z4Q2 680 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 SERINC5Q86VE9 423 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 TRIM50Q86XT4 487 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.69□□□□□ -0.38
SSBP3-206ENST00000420121 CCDC155Q8N6L0 562 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 USP38Q8NB14 1042 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 GPRASP2Q96D09 838 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 PRDM12Q9H4Q4 367 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 TUT1Q9H6E5 874 aaKnown RBP12.69□□□□□ -0.38
SSBP3-206ENST00000420121 RBM28Q9NW13 759 aaKnown RBP12.69□□□□□ -0.38
SSBP3-206ENST00000420121 PCDHA6Q9UN73 950 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 PCDHA8Q9Y5H6 950 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 PCDHA11Q9Y5I1 949 aa12.69□□□□□ -0.38
SSBP3-206ENST00000420121 COL4A4P53420 1690 aaPredicted RBP12.69□□□□□ -0.38
SSBP3-206ENST00000420121 STXBP3O00186 592 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 ARHGEF15O94989 841 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 ADAM17P78536 824 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 ZNF618Q5T7W0 954 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 USP26Q9BXU7 913 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 AGXT2Q9BYV1 514 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 OSBPL7Q9BZF2 842 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 RNPEPQ9H4A4 650 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 MSRAQ9UJ68 235 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 LOXHD1Q8IVV2 1947 aa12.68□□□□□ -0.38
SSBP3-206ENST00000420121 GOLGA8AA7E2F4 631 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 GOLGA8BA8MQT2 603 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 DLL1O00548 723 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 ADAMTS3O15072 1205 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 TREHO43280 583 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 BAIAP3O94812 1187 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 HMGB1P09429 215 aaKnown RBP12.67□□□□□ -0.38
SSBP3-206ENST00000420121 SMIM10L2AP0DMW4 78 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 SMIM10L2BP0DMW5 78 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 ACTN1P12814 892 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 ADD1P35611 737 aaKnown RBP12.67□□□□□ -0.38
SSBP3-206ENST00000420121 CLK2P49760 499 aaKnown RBP12.67□□□□□ -0.38
SSBP3-206ENST00000420121 WDR5P61964 334 aaKnown RBP12.67□□□□□ -0.38
SSBP3-206ENST00000420121 APOBRQ0VD83 1088 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 PPP1R18Q6NYC8 613 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 SYNE3Q6ZMZ3 975 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 Q6ZUG5 572 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 NLRX1Q86UT6 975 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 FBXL16Q8N461 479 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 PHOSPHO2Q8TCD6 241 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 JAKMIP1Q96N16 626 aaKnown RBP12.67□□□□□ -0.38
SSBP3-206ENST00000420121 SLC9A7Q96T83 725 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 FTOQ9C0B1 505 aaKnown RBP eCLIP12.67□□□□□ -0.38
SSBP3-206ENST00000420121 SLC28A3Q9HAS3 691 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 RIC8AQ9NPQ8 531 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 JADE2Q9NQC1 790 aa12.67□□□□□ -0.38
SSBP3-206ENST00000420121 V9GY48 417 aaPredicted RBP12.67□□□□□ -0.38
SSBP3-206ENST00000420121 GSTTP1A0A1W2PQM5 241 aa12.66□□□□□ -0.38
SSBP3-206ENST00000420121 C17orf102A2RUQ5 167 aa12.66□□□□□ -0.38
SSBP3-206ENST00000420121 SPDYE3A6NKU9 549 aa12.66□□□□□ -0.38
SSBP3-206ENST00000420121 NOP56O00567 594 aaKnown RBP12.66□□□□□ -0.38
SSBP3-206ENST00000420121 CA3P07451 260 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms