RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 APBB2Q92870 758 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 ZSCAN10Q96SZ4 725 aaPredicted RBP16.11■□□□□ 0.17
VPS29-201ENST00000360579 C16orf70Q9BSU1 422 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 MLXIPQ9HAP2 919 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 COL4A6Q14031 1691 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 H3BRB1 525 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 HAX1O00165 279 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 KDM4AO75164 1064 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 RGS20O76081 388 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 GNAT1P11488 350 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 HOXC8P31273 242 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 TRAF1Q13077 416 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 HIC1Q14526 733 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 STOX1Q6ZVD7 989 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 VSIG10LQ86VR7 867 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 ADHFE1Q8IWW8 467 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 POP1Q99575 1024 aaKnown RBP16.1■□□□□ 0.17
VPS29-201ENST00000360579 TUT1Q9H6E5 874 aaKnown RBP16.1■□□□□ 0.17
VPS29-201ENST00000360579 VAT1LQ9HCJ6 419 aa16.1■□□□□ 0.17
VPS29-201ENST00000360579 C19orf67A6NJJ6 358 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 TRIM6-TRIM34B2RNG4 842 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 UPP2O95045 317 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 RB1P06400 928 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 UBA1P22314 1058 aaKnown RBP16.09■□□□□ 0.17
VPS29-201ENST00000360579 CCND2P30279 289 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 NHLH1Q02575 133 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 ENAHQ8N8S7 591 aaPredicted RBP16.09■□□□□ 0.17
VPS29-201ENST00000360579 MFSD14AQ96MC6 490 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 USP26Q9BXU7 913 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 IFIH1Q9BYX4 1025 aaKnown RBP16.09■□□□□ 0.17
VPS29-201ENST00000360579 LMAN2LQ9H0V9 348 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 CLDND1Q9NY35 253 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 RWDD3Q9Y3V2 267 aa16.09■□□□□ 0.17
VPS29-201ENST00000360579 MICAL3Q7RTP6 2002 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 NOP56O00567 594 aaKnown RBP16.08■□□□□ 0.16
VPS29-201ENST00000360579 OPLAHO14841 1288 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 SMIM10L2AP0DMW4 78 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 SMIM10L2BP0DMW5 78 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 PGM5Q15124 567 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 FIBCD1Q8N539 461 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 IL17RAQ96F46 866 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 FBXL18Q96ME1 805 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 C11orf84Q9BUA3 381 aaPredicted RBP16.08■□□□□ 0.16
VPS29-201ENST00000360579 PCDHA1Q9Y5I3 950 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 WDFY4Q6ZS81 3184 aa16.08■□□□□ 0.16
VPS29-201ENST00000360579 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.07■□□□□ 0.16
VPS29-201ENST00000360579 C5orf67F2Z3F1 127 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 ZBTB5O15062 677 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 TREHO43280 583 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 SORBS3O60504 671 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 LGALS2P05162 132 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 CTSHP09668 335 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 SP2Q02086 613 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 GNPTABQ3T906 1256 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 RPAINQ86UA6 219 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 RILPL2Q969X0 211 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 UBAC1Q9BSL1 405 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 KRT23Q9C075 422 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 RNPEPQ9H4A4 650 aa16.07■□□□□ 0.16
VPS29-201ENST00000360579 B4E1Z4 1266 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 GCOM1H8Y6P7 765 aaPredicted RBP16.06■□□□□ 0.16
VPS29-201ENST00000360579 STAM2O75886 525 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 POLR2MP0CAP2 368 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 CTNNB1P35222 781 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 NEDD9Q14511 834 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 SMAD2Q15796 467 aaKnown RBP16.06■□□□□ 0.16
VPS29-201ENST00000360579 CTC1Q2NKJ3 1217 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 MTMR8Q96EF0 704 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 CNNM2Q9H8M5 875 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 ZSWIM5Q9P217 1185 aa16.06■□□□□ 0.16
VPS29-201ENST00000360579 ZNF215Q9UL58 517 aaPredicted RBP16.06■□□□□ 0.16
VPS29-201ENST00000360579 KLRF2D3W0D1 207 aa16.05■□□□□ 0.16
VPS29-201ENST00000360579 SDSP20132 328 aa16.05■□□□□ 0.16
VPS29-201ENST00000360579 HOXA13P31271 388 aaPredicted RBP16.05■□□□□ 0.16
VPS29-201ENST00000360579 IRS1P35568 1242 aa16.05■□□□□ 0.16
VPS29-201ENST00000360579 BMPR1AP36894 532 aa16.05■□□□□ 0.16
VPS29-201ENST00000360579 IMMTQ16891 758 aaKnown RBP16.05■□□□□ 0.16
VPS29-201ENST00000360579 FAM26DQ5JW98 314 aa16.05■□□□□ 0.16
VPS29-201ENST00000360579 IFIT1BQ5T764 474 aaKnown RBP16.05■□□□□ 0.16
VPS29-201ENST00000360579 METTL7BQ6UX53 244 aa16.05■□□□□ 0.16
VPS29-201ENST00000360579 HFE2Q6ZVN8 426 aa16.05■□□□□ 0.16
VPS29-201ENST00000360579 LTBRP36941 435 aa16.04■□□□□ 0.16
VPS29-201ENST00000360579 SMAD4Q13485 552 aaKnown RBP16.04■□□□□ 0.16
VPS29-201ENST00000360579 HERC4Q5GLZ8 1057 aaPredicted RBP16.04■□□□□ 0.16
VPS29-201ENST00000360579 STAG2Q8N3U4 1231 aa16.04■□□□□ 0.16
VPS29-201ENST00000360579 IL31RAQ8NI17 732 aa16.04■□□□□ 0.16
VPS29-201ENST00000360579 SETD4Q9NVD3 440 aa16.04■□□□□ 0.16
VPS29-201ENST00000360579 ADGRA3Q8IWK6 1321 aa16.03■□□□□ 0.16
VPS29-201ENST00000360579 PPP1R11O60927 126 aaPredicted RBP16.03■□□□□ 0.16
VPS29-201ENST00000360579 ICAM3P32942 547 aa16.03■□□□□ 0.16
VPS29-201ENST00000360579 HDAC1Q13547 482 aaPredicted RBP16.03■□□□□ 0.16
VPS29-201ENST00000360579 FCHSD1Q86WN1 690 aa16.03■□□□□ 0.16
VPS29-201ENST00000360579 CLP1Q92989 425 aaKnown RBP16.03■□□□□ 0.16
VPS29-201ENST00000360579 PPP2R3CQ969Q6 453 aa16.03■□□□□ 0.16
VPS29-201ENST00000360579 DSCC1Q9BVC3 393 aa16.03■□□□□ 0.16
VPS29-201ENST00000360579 PLVAPQ9BX97 442 aa16.03■□□□□ 0.16
VPS29-201ENST00000360579 DIAPH3Q9NSV4 1193 aa16.03■□□□□ 0.16
VPS29-201ENST00000360579 MYH7BA7E2Y1 1941 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 NRCAMQ92823 1304 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 RALGAPA2Q2PPJ7 1873 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms