RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 IFNAR2P48551 515 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 ZFPM1Q8IX07 1006 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 RETREG2Q8NC44 543 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 THAP9Q9H5L6 903 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 TMOD2Q9NZR1 351 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 ARHGAP20Q9P2F6 1191 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 COL4A3BPQ9Y5P4 624 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 MED1Q15648 1581 aaPredicted RBP13.11□□□□□ -0.31
USP1-201ENST00000339950 KRIT1O00522 736 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 ATP8B1O43520 1251 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 DHX9Q08211 1270 aaKnown RBP13.11□□□□□ -0.31
USP1-201ENST00000339950 QRICH1Q2TAL8 776 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 WDR59Q6PJI9 974 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 GIMAP8Q8ND71 665 aaPredicted RBP13.11□□□□□ -0.31
USP1-201ENST00000339950 ERMNQ8TAM6 284 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 L1RE1Q9UN81 338 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 BCL9O00512 1426 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 GUCY1A3Q02108 690 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 CAPS2Q9BXY5 557 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 MLXIPLQ9NP71 852 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 DAGLAQ9Y4D2 1042 aa13.11□□□□□ -0.31
USP1-201ENST00000339950 TTLL1O95922 423 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 GH2P01242 217 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 EEF2P13639 858 aaKnown RBP13.1□□□□□ -0.31
USP1-201ENST00000339950 KLRC1P26715 233 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 PSMC6P62333 389 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 EXOC3L4Q17RC7 722 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 KRT71Q3SY84 523 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 ZC2HC1CQ53FD0 456 aaPredicted RBP13.1□□□□□ -0.31
USP1-201ENST00000339950 PRR5LQ6MZQ0 368 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 NSMFQ6X4W1 530 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 DPH6Q7L8W6 267 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 TEKT1Q969V4 418 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 SRGNP10124 158 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 PDHBP11177 359 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 KCNH2Q12809 1159 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 CDC37Q16543 378 aaPredicted RBP13.1□□□□□ -0.31
USP1-201ENST00000339950 WDR78Q5VTH9 848 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 FAM71BQ8TC56 605 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 CTTNBP2NLQ9P2B4 639 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 POLLQ9UGP5 575 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.1□□□□□ -0.31
USP1-201ENST00000339950 NMT1P30419 496 aaKnown RBP13.1□□□□□ -0.31
USP1-201ENST00000339950 GRB10Q13322 594 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 SLC35G1Q2M3R5 365 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 HS2ST1Q7LGA3 356 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 LRRC15Q8TF66 581 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 ARL8AQ96BM9 186 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 SPATA31A1Q5TZJ5 1347 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 TNS2Q63HR2 1409 aa13.1□□□□□ -0.31
USP1-201ENST00000339950 LRRC37A3O60309 1634 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 FRMD3A2A2Y4 597 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 TOM1O60784 492 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 SEC24CP53992 1094 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 TRIP13Q15645 432 aaPredicted RBP13.09□□□□□ -0.31
USP1-201ENST00000339950 MTMR8Q96EF0 704 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 HDAC9Q9UKV0 1011 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 ATP8A1Q9Y2Q0 1164 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 EPB41P11171 864 aaKnown RBP13.09□□□□□ -0.31
USP1-201ENST00000339950 KCNA1Q09470 495 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 NT5DC1Q5TFE4 455 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 SH3RF1Q7Z6J0 888 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 BICD1Q96G01 975 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 FAM84AQ96KN4 292 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 JRKLQ9Y4A0 524 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 CAPN7Q9Y6W3 813 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 A0A087X0T9 212 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 OPA1O60313 960 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 RHOBTB3O94955 611 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 FAM228BP0C875 321 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 TNFAIP3P21580 790 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 CTNNA1P35221 906 aaKnown RBP13.09□□□□□ -0.31
USP1-201ENST00000339950 NNTQ13423 1086 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 APTXQ7Z2E3 356 aaKnown RBP13.09□□□□□ -0.31
USP1-201ENST00000339950 KCND1Q9NSA2 647 aa13.09□□□□□ -0.31
USP1-201ENST00000339950 CASP4P49662 377 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 IFT88Q13099 833 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 GBP6Q6ZN66 633 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 CPLX4Q7Z7G2 160 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 IFT20Q8IY31 132 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 THOC1Q96FV9 657 aaKnown RBP13.08□□□□□ -0.31
USP1-201ENST00000339950 ANO3Q9BYT9 981 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 TSGA10Q9BZW7 698 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 ANAPC4Q9UJX5 808 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 LEMD3Q9Y2U8 911 aa13.08□□□□□ -0.31
USP1-201ENST00000339950 AFDNP55196 1824 aaKnown RBP13.08□□□□□ -0.32
USP1-201ENST00000339950 KRT5P13647 590 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 MTM1Q13496 603 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 SNX1Q13596 522 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 UNC13DQ70J99 1090 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 CCDC50Q8IVM0 306 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 NEDD1Q8NHV4 660 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 RAD54LQ92698 747 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 CELF4Q9BZC1 486 aaKnown RBP13.08□□□□□ -0.32
USP1-201ENST00000339950 DDX4Q9NQI0 724 aaKnown RBP13.08□□□□□ -0.32
USP1-201ENST00000339950 MTMR4Q9NYA4 1195 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 GCNT4Q9P109 453 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 USTQ9Y2C2 406 aa13.08□□□□□ -0.32
USP1-201ENST00000339950 MYBP10242 640 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms