RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 PTPROQ16827 1216 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 LRRC55Q6ZSA7 311 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 UBLCP1Q8WVY7 318 aaPredicted RBP11.95□□□□□ -0.5
ZNF558-201ENST00000301475 CACNA1SQ13698 1873 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 CCDC88AQ3V6T2 1871 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 KCNK3O14649 394 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 PDE8AO60658 829 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 FGRP09769 529 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 GHRP10912 638 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 CCNHP51946 323 aaPredicted RBP11.95□□□□□ -0.5
ZNF558-201ENST00000301475 CUL1Q13616 776 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 AGBL2Q5U5Z8 902 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 MSL1Q68DK7 614 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 RUFY4Q6ZNE9 571 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 CCDC47Q96A33 483 aaKnown RBP11.95□□□□□ -0.5
ZNF558-201ENST00000301475 LRRC45Q96CN5 670 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 KDM4CQ9H3R0 1056 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 ABCF2Q9UG63 623 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 PCDHA6Q9UN73 950 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 PCDHA8Q9Y5H6 950 aa11.95□□□□□ -0.5
ZNF558-201ENST00000301475 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.94□□□□□ -0.5
ZNF558-201ENST00000301475 A0A087X0T9 212 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 NOL4O94818 638 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 FAM228BP0C875 321 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 MYO1EQ12965 1108 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 PPP1R7Q15435 360 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 ARMC9Q7Z3E5 817 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 CPLX4Q7Z7G2 160 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 FMNL3Q8IVF7 1028 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 EIF1ADQ8N9N8 165 aaKnown RBP11.94□□□□□ -0.5
ZNF558-201ENST00000301475 GLIS3Q8NEA6 775 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.94□□□□□ -0.5
ZNF558-201ENST00000301475 TBC1D5Q92609 795 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 CUL5Q93034 780 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 AP1M1Q9BXS5 423 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 CUEDC2Q9H467 287 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 MAGEF1Q9HAY2 307 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 A0A1B0GUL6 1792 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 TRIM37O94972 964 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 KIAA0753Q2KHM9 967 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 SLC9C1Q4G0N8 1177 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 COBLL1Q53SF7 1204 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 CNNM4Q6P4Q7 775 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 MAB21L3Q8N8X9 362 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 SCFD2Q8WU76 684 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 NSMCE1Q8WV22 266 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 P3H4Q92791 437 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 DDX47Q9H0S4 455 aaKnown RBP11.94□□□□□ -0.5
ZNF558-201ENST00000301475 EBF2Q9HAK2 575 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 KCNG1Q9UIX4 513 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.94□□□□□ -0.5
ZNF558-201ENST00000301475 SLIT2O94813 1529 aa11.94□□□□□ -0.5
ZNF558-201ENST00000301475 SLC35G1Q2M3R5 365 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 NBPF9Q3BBW0 867 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 KRT71Q3SY84 523 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 TMC3Q7Z5M5 1100 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 MMTAG2Q9BU76 263 aaKnown RBP11.93□□□□□ -0.5
ZNF558-201ENST00000301475 CASZ1Q86V15 1759 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 TOGARAM1Q9Y4F4 1720 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 COL1A1P02452 1464 aaPredicted RBP11.93□□□□□ -0.5
ZNF558-201ENST00000301475 ABCB11O95342 1321 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 CCT8L1PA6NM43 557 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 SART1O43290 800 aaKnown RBP11.93□□□□□ -0.5
ZNF558-201ENST00000301475 DAPK3O43293 454 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 BUB1BO60566 1050 aaPredicted RBP11.93□□□□□ -0.5
ZNF558-201ENST00000301475 SERPING1P05155 500 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 PPP1R2P41236 205 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 ARID5AQ03989 594 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 ENOX2Q16206 610 aaKnown RBP11.93□□□□□ -0.5
ZNF558-201ENST00000301475 SLC18A3Q16572 532 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 FAM83BQ5T0W9 1011 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 DNAAF5Q86Y56 855 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 ANKS1AQ92625 1134 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 HOOK2Q96ED9 719 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 THOC1Q96FV9 657 aaKnown RBP11.93□□□□□ -0.5
ZNF558-201ENST00000301475 SLC12A4Q9UP95 1085 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 L3MBTL1Q9Y468 752 aa11.93□□□□□ -0.5
ZNF558-201ENST00000301475 USP17L12C9JPN9 530 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 USP17L21D6R901 530 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 UBAP1LF5GYI3 381 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 ZBTB48P10074 688 aaPredicted RBP11.92□□□□□ -0.5
ZNF558-201ENST00000301475 SLC8A3P57103 927 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 ERMARDQ5T6L9 678 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 SFMBT2Q5VUG0 894 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 RCSD1Q6JBY9 416 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 TAX1BP1Q86VP1 789 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 TCP11Q8WWU5 503 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 CHMP6Q96FZ7 201 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 ZNF317Q96PQ6 595 aaPredicted RBP11.92□□□□□ -0.5
ZNF558-201ENST00000301475 XPO6Q96QU8 1125 aaKnown RBP11.92□□□□□ -0.5
ZNF558-201ENST00000301475 TANGO6Q9C0B7 1094 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 ADAMTS1Q9UHI8 967 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 ATP6V0A2Q9Y487 856 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 NUP98P52948 1817 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 MYMKA6NI61 221 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 F8VZ95 297 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 CEP104O60308 925 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 KIF4AO95239 1232 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 ITGA4P13612 1032 aa11.92□□□□□ -0.5
ZNF558-201ENST00000301475 PRPHP41219 470 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms