RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 PRUNE2Q8WUY3 3088 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 PTPRSQ13332 1948 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 FIBPO43427 364 aa16.56■□□□□ 0.24
HMGN3-201ENST00000275036 EVCP57679 992 aa16.56■□□□□ 0.24
HMGN3-201ENST00000275036 GNPTABQ3T906 1256 aa16.56■□□□□ 0.24
HMGN3-201ENST00000275036 XRRA1Q6P2D8 792 aa16.56■□□□□ 0.24
HMGN3-201ENST00000275036 ZNF576Q9H609 170 aa16.56■□□□□ 0.24
HMGN3-201ENST00000275036 MLXIPQ9HAP2 919 aa16.56■□□□□ 0.24
HMGN3-201ENST00000275036 RIC8AQ9NPQ8 531 aa16.56■□□□□ 0.24
HMGN3-201ENST00000275036 BARHL2Q9NY43 387 aa16.56■□□□□ 0.24
HMGN3-201ENST00000275036 ADAMTS3O15072 1205 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 PPFIA3O75145 1194 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 PPFIA4O75335 1185 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 ITGB5P18084 799 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 RABGGTBP53611 331 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 NTRK3Q16288 839 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 PKN1Q16512 942 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 PFKFB3Q16875 520 aaPredicted RBP16.55■□□□□ 0.24
HMGN3-201ENST00000275036 TCTN1Q2MV58 587 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 TRIM71Q2Q1W2 868 aaKnown RBP16.55■□□□□ 0.24
HMGN3-201ENST00000275036 PPP1R18Q6NYC8 613 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 TRAF7Q6Q0C0 670 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 CYFIP1Q7L576 1253 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 RPUSD2Q8IZ73 545 aaKnown RBP16.55■□□□□ 0.24
HMGN3-201ENST00000275036 C7orf31Q8N865 590 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 PGBD1Q96JS3 809 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 UPF3BQ9BZI7 483 aaKnown RBP16.55■□□□□ 0.24
HMGN3-201ENST00000275036 NOD1Q9Y239 953 aa16.55■□□□□ 0.24
HMGN3-201ENST00000275036 CCDC196A0A1B0GTZ2 297 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 SMCO2A6NFE2 343 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 SPDYE3A6NKU9 549 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 hCG_1984214I3L0E3 225 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 ATP9AO75110 1047 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 LGALS2P05162 132 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 MYOGP15173 224 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 PDIA3P30101 505 aaKnown RBP16.54■□□□□ 0.24
HMGN3-201ENST00000275036 RBL2Q08999 1139 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 BFSP2Q13515 415 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 METTL7BQ6UX53 244 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 TRIM50Q86XT4 487 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 ZNF713Q8N859 430 aaPredicted RBP16.54■□□□□ 0.24
HMGN3-201ENST00000275036 PHKBQ93100 1093 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 GPR20Q99678 358 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 LARP6Q9BRS8 491 aaKnown RBP16.54■□□□□ 0.24
HMGN3-201ENST00000275036 KATNAL1Q9BW62 490 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 TM6SF1Q9BZW5 370 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 NKX2-4Q9H2Z4 354 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 NCOA5Q9HCD5 579 aaKnown RBP16.54■□□□□ 0.24
HMGN3-201ENST00000275036 TMEM260Q9NX78 707 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 UBIAD1Q9Y5Z9 338 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 A0A0C4DFX4 3053 aa16.54■□□□□ 0.24
HMGN3-201ENST00000275036 ZBBXA8MT70 800 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 PFKMP08237 780 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 CKBP12277 381 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 SCG2P13521 617 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 FOSL2P15408 326 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 KCNA2P16389 499 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 HOXC8P31273 242 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 RFC2P35250 354 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 CLK2P49760 499 aaKnown RBP16.53■□□□□ 0.24
HMGN3-201ENST00000275036 ADCY7P51828 1080 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 CCT2P78371 535 aaKnown RBP16.53■□□□□ 0.24
HMGN3-201ENST00000275036 NEDD9Q14511 834 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 MBTPS1Q14703 1052 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 RETREG2Q8NC44 543 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 CAGE1Q8TC20 777 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 GPRASP2Q96D09 838 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 SENP7Q9BQF6 1050 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 CYP46A1Q9Y6A2 500 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 SLC4A7Q9Y6M7 1214 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 VCANP13611 3396 aa16.53■□□□□ 0.24
HMGN3-201ENST00000275036 PRPF3O43395 683 aaKnown RBP16.52■□□□□ 0.24
HMGN3-201ENST00000275036 NBNO60934 754 aa16.52■□□□□ 0.24
HMGN3-201ENST00000275036 PTK7Q13308 1070 aa16.52■□□□□ 0.24
HMGN3-201ENST00000275036 LRRC8DQ7L1W4 858 aa16.52■□□□□ 0.24
HMGN3-201ENST00000275036 NLRX1Q86UT6 975 aa16.52■□□□□ 0.24
HMGN3-201ENST00000275036 MAFAQ8NHW3 353 aaPredicted RBP16.52■□□□□ 0.24
HMGN3-201ENST00000275036 CYP2W1Q8TAV3 490 aa16.52■□□□□ 0.24
HMGN3-201ENST00000275036 AFAP1L1Q8TED9 768 aa16.52■□□□□ 0.24
HMGN3-201ENST00000275036 ANO3Q9BYT9 981 aa16.52■□□□□ 0.24
HMGN3-201ENST00000275036 MTIF3Q9H2K0 278 aaKnown RBP16.52■□□□□ 0.24
HMGN3-201ENST00000275036 WDR81Q562E7 1941 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 SPTBN5Q9NRC6 3674 aaKnown RBP16.51■□□□□ 0.23
HMGN3-201ENST00000275036 H3BRB1 525 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 NOP56O00567 594 aaKnown RBP16.51■□□□□ 0.23
HMGN3-201ENST00000275036 ARHGEF15O94989 841 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 SELPP16109 830 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 ATP2A2P16615 1042 aaKnown RBP16.51■□□□□ 0.23
HMGN3-201ENST00000275036 IFNAR1P17181 557 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 SP4Q02446 784 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 RAB30Q15771 203 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 ZNF618Q5T7W0 954 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 PRDM12Q9H4Q4 367 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 TUT1Q9H6E5 874 aaKnown RBP16.51■□□□□ 0.23
HMGN3-201ENST00000275036 JADE2Q9NQC1 790 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 PKD2L1Q9P0L9 805 aa16.51■□□□□ 0.23
HMGN3-201ENST00000275036 FOSP01100 380 aaPredicted RBP16.5■□□□□ 0.23
HMGN3-201ENST00000275036 CXCL10P02778 98 aa16.5■□□□□ 0.23
HMGN3-201ENST00000275036 SMIM10L2AP0DMW4 78 aa16.5■□□□□ 0.23
HMGN3-201ENST00000275036 SMIM10L2BP0DMW5 78 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms