RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 CALM3P0DP25 149 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 ACTN1P12814 892 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 UBA1P22314 1058 aaKnown RBP11.22□□□□□ -0.61
VPS41-201ENST00000265745 ICAM3P32942 547 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 RABGGTBP53611 331 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 RBL2Q08999 1139 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 FRMPD4Q14CM0 1322 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 KIAA0753Q2KHM9 967 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 USP17L6PQ6QN14 398 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 CUL9Q8IWT3 2517 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 PLPP6Q8IY26 295 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 CMTR1Q8N1G2 835 aaKnown RBP11.22□□□□□ -0.61
VPS41-201ENST00000265745 FANCBQ8NB91 859 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 DHX38Q92620 1227 aaKnown RBP11.22□□□□□ -0.61
VPS41-201ENST00000265745 C16orf70Q9BSU1 422 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 ALG1Q9BT22 464 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 LRRC2Q9BYS8 371 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 NKX2-4Q9H2Z4 354 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 BCAS3Q9H6U6 928 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 MLXIPQ9HAP2 919 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 SLC28A3Q9HAS3 691 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 RTEL1Q9NZ71 1219 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 DAXXQ9UER7 740 aaPredicted RBP11.22□□□□□ -0.61
VPS41-201ENST00000265745 SEC63Q9UGP8 760 aaKnown RBP11.22□□□□□ -0.61
VPS41-201ENST00000265745 PCDHA11Q9Y5I1 949 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 SLC12A7Q9Y666 1083 aa11.22□□□□□ -0.61
VPS41-201ENST00000265745 GPR37O15354 613 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 MYOGP15173 224 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 SELPP16109 830 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 RXRAP19793 462 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 ZNF200P98182 395 aaPredicted RBP11.21□□□□□ -0.61
VPS41-201ENST00000265745 SEMA3FQ13275 785 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 PTK7Q13308 1070 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 TSGA10IPQ3SY00 556 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 GNPTABQ3T906 1256 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 RNF20Q5VTR2 975 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 PCNX4Q63HM2 1172 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 XRRA1Q6P2D8 792 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 SGMS1Q86VZ5 419 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 CCDC155Q8N6L0 562 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 SMARCC2Q8TAQ2 1214 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 PHOSPHO2Q8TCD6 241 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 AFAP1L1Q8TED9 768 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 CUL5Q93034 780 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 FTOQ9C0B1 505 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS41-201ENST00000265745 PRDM12Q9H4Q4 367 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 PSTPIP2Q9H939 334 aa11.21□□□□□ -0.61
VPS41-201ENST00000265745 PARNO95453 639 aaKnown RBP11.2□□□□□ -0.62
VPS41-201ENST00000265745 CKBP12277 381 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 EXOSC10Q01780 885 aaKnown RBP11.2□□□□□ -0.62
VPS41-201ENST00000265745 ADGRE1Q14246 886 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 NEDD9Q14511 834 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 HIC1Q14526 733 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 TRAF7Q6Q0C0 670 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 METTL7BQ6UX53 244 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 TMTC3Q6ZXV5 915 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 LRRC8DQ7L1W4 858 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 RAB11FIP4Q86YS3 637 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 HOMEZQ8IX15 550 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 CCDC82Q8N4S0 544 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 NEK1Q96PY6 1258 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 GAS2L1Q99501 681 aaPredicted RBP11.2□□□□□ -0.62
VPS41-201ENST00000265745 SENP7Q9BQF6 1050 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 COL25A1Q9BXS0 654 aaPredicted RBP11.2□□□□□ -0.62
VPS41-201ENST00000265745 LAMA4Q16363 1823 aa11.2□□□□□ -0.62
VPS41-201ENST00000265745 hCG_1642624A0A1W2PR95 340 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 C2orf72A6NCS6 295 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 H3BRB1 525 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 FIBPO43427 364 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 NBNO60934 754 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 BAIAP3O94812 1187 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 CXCL10P02778 98 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 LGALS2P05162 132 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 TRIM71Q2Q1W2 868 aaKnown RBP11.19□□□□□ -0.62
VPS41-201ENST00000265745 PPP2R2DQ66LE6 453 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 CYFIP1Q7L576 1253 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 DHX32Q7L7V1 743 aaKnown RBP11.19□□□□□ -0.62
VPS41-201ENST00000265745 USP38Q8NB14 1042 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 WNT8BQ93098 351 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 SLC9A7Q96T83 725 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 GPR20Q99678 358 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 USP26Q9BXU7 913 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 TUT1Q9H6E5 874 aaKnown RBP11.19□□□□□ -0.62
VPS41-201ENST00000265745 TELO2Q9Y4R8 837 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 SCN10AQ9Y5Y9 1956 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 UNC80Q8N2C7 3258 aa11.19□□□□□ -0.62
VPS41-201ENST00000265745 GRXCR2A6NFK2 248 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 NOP56O00567 594 aaKnown RBP11.18□□□□□ -0.62
VPS41-201ENST00000265745 CDC45O75419 566 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 ITGB5P18084 799 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 HOXC8P31273 242 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 FUT2Q10981 343 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 MBTPS1Q14703 1052 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 ADCK5Q3MIX3 580 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 ZNF618Q5T7W0 954 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 APOA5Q6Q788 366 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 SYNE3Q6ZMZ3 975 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 NLRX1Q86UT6 975 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 SERINC5Q86VE9 423 aa11.18□□□□□ -0.62
VPS41-201ENST00000265745 MICU3Q86XE3 530 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms