RNA–Protein interactions for RNA: YMR173W

DDR48, Transcript of DNA damage-responsive protein, yeastyeast

Gene DDR48, Length 1,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DDR48YMR173W ECM25P32525 599 aa2.34□□□□□ -2.03
DDR48YMR173W KAR9P32526 644 aa2.34□□□□□ -2.03
DDR48YMR173W MNS1P32906 549 aa2.34□□□□□ -2.03
DDR48YMR173W THI2P38141 450 aa2.34□□□□□ -2.03
DDR48YMR173W MRP21P38175 177 aa2.34□□□□□ -2.03
DDR48YMR173W YBR137WP38276 179 aa2.34□□□□□ -2.03
DDR48YMR173W YEL057CP39983 233 aa2.34□□□□□ -2.03
DDR48YMR173W LAM5P43560 674 aa2.34□□□□□ -2.03
DDR48YMR173W NCA3P46955 337 aa2.34□□□□□ -2.03
DDR48YMR173W YNR048WP53740 393 aa2.34□□□□□ -2.03
DDR48YMR173W CWC25P53854 179 aaKnown RBP2.34□□□□□ -2.03
DDR48YMR173W HIS4P00815 799 aaKnown RBP2.33□□□□□ -2.04
DDR48YMR173W ITR1P30605 584 aa2.33□□□□□ -2.04
DDR48YMR173W KKQ8P36004 724 aa2.33□□□□□ -2.04
DDR48YMR173W CMC1P36064 111 aa2.33□□□□□ -2.04
DDR48YMR173W CST26P38226 397 aa2.33□□□□□ -2.04
DDR48YMR173W VTC2P43585 828 aa2.33□□□□□ -2.04
DDR48YMR173W ECM27P47144 725 aa2.33□□□□□ -2.04
DDR48YMR173W RMD9P53140 646 aaKnown RBP2.33□□□□□ -2.04
DDR48YMR173W HAL1Q01766 294 aa2.33□□□□□ -2.04
DDR48YMR173W GIR2Q03768 265 aaPredicted RBP2.33□□□□□ -2.04
DDR48YMR173W SGT1Q08446 395 aa2.33□□□□□ -2.04
DDR48YMR173W ENT1Q12518 454 aa2.33□□□□□ -2.04
DDR48YMR173W RTP1Q12751 981 aa2.33□□□□□ -2.04
DDR48YMR173W TRP1P00912 224 aa2.32□□□□□ -2.04
DDR48YMR173W SPB1P25582 841 aaPredicted RBP2.32□□□□□ -2.04
DDR48YMR173W IMP2'P32351 346 aa2.32□□□□□ -2.04
DDR48YMR173W PRP21P32524 280 aaPredicted RBP2.32□□□□□ -2.04
DDR48YMR173W GAB1P41733 394 aa2.32□□□□□ -2.04
DDR48YMR173W ARE2P53629 642 aaKnown RBP2.32□□□□□ -2.04
DDR48YMR173W DSL1P53847 754 aa2.32□□□□□ -2.04
DDR48YMR173W JJJ1P53863 590 aa2.32□□□□□ -2.04
DDR48YMR173W YDR239CQ03780 787 aa2.32□□□□□ -2.04
DDR48YMR173W PPM1Q04081 328 aa2.32□□□□□ -2.04
DDR48YMR173W HSP31Q04432 237 aa2.32□□□□□ -2.04
DDR48YMR173W RQC1Q05468 723 aaKnown RBP2.32□□□□□ -2.04
DDR48YMR173W IRC25Q07951 179 aa2.32□□□□□ -2.04
DDR48YMR173W ATG29Q12092 213 aa2.32□□□□□ -2.04
DDR48YMR173W GPH1P06738 902 aaKnown RBP2.31□□□□□ -2.04
DDR48YMR173W SPS4P09937 338 aa2.31□□□□□ -2.04
DDR48YMR173W PCL1P24867 279 aa2.31□□□□□ -2.04
DDR48YMR173W NIP100P33420 868 aa2.31□□□□□ -2.04
DDR48YMR173W MID2P36027 376 aa2.31□□□□□ -2.04
DDR48YMR173W UTH1P36135 365 aa2.31□□□□□ -2.04
DDR48YMR173W VID24P38263 362 aa2.31□□□□□ -2.04
DDR48YMR173W MET18P40469 1032 aa2.31□□□□□ -2.04
DDR48YMR173W HXT14P42833 540 aa2.31□□□□□ -2.04
DDR48YMR173W RMD8P43620 662 aa2.31□□□□□ -2.04
DDR48YMR173W YGR149WP48236 432 aa2.31□□□□□ -2.04
DDR48YMR173W BRO1P48582 844 aa2.31□□□□□ -2.04
DDR48YMR173W PCP1P53259 346 aa2.31□□□□□ -2.04
DDR48YMR173W YPR022CQ12139 1133 aa2.31□□□□□ -2.04
DDR48YMR173W ARG4P04076 463 aaPredicted RBP2.3□□□□□ -2.04
DDR48YMR173W SEC63P14906 663 aa2.3□□□□□ -2.04
DDR48YMR173W POP5P28005 173 aa2.3□□□□□ -2.04
DDR48YMR173W AFG1P32317 509 aa2.3□□□□□ -2.04
DDR48YMR173W NUP2P32499 720 aa2.3□□□□□ -2.04
DDR48YMR173W VID27P40157 782 aa2.3□□□□□ -2.04
DDR48YMR173W SVL3Q03088 825 aaKnown RBP2.3□□□□□ -2.04
DDR48YMR173W PLP2Q12017 286 aa2.3□□□□□ -2.04
DDR48YMR173W YLR278CQ05854 1341 aa2.29□□□□□ -2.04
DDR48YMR173W CYC3P06182 269 aa2.29□□□□□ -2.04
DDR48YMR173W RIP1P08067 215 aa2.29□□□□□ -2.04
DDR48YMR173W APE2P32454 952 aaKnown RBP2.29□□□□□ -2.04
DDR48YMR173W MUD1P32605 298 aaKnown RBP2.29□□□□□ -2.04
DDR48YMR173W LYS1P38998 373 aaRIP-Chip data2.29□□□□□ -2.04not detected
DDR48YMR173W UTP18P40362 594 aaPredicted RBP2.29□□□□□ -2.04
DDR48YMR173W SPO22P40511 975 aa2.29□□□□□ -2.04
DDR48YMR173W SSU1P41930 458 aa2.29□□□□□ -2.04
DDR48YMR173W KTR5P53966 522 aaPredicted RBP2.29□□□□□ -2.04
DDR48YMR173W YDR387CQ04162 555 aa2.29□□□□□ -2.04
DDR48YMR173W CUE5Q08412 411 aaKnown RBP2.29□□□□□ -2.04
DDR48YMR173W RMD5Q12508 421 aa2.29□□□□□ -2.04
DDR48YMR173W TEF1P02994 458 aaKnown RBP2.28□□□□□ -2.04
DDR48YMR173W TOP1P04786 769 aa2.28□□□□□ -2.04
DDR48YMR173W MET8P15807 274 aa2.28□□□□□ -2.04
DDR48YMR173W PMT1P33775 817 aa2.28□□□□□ -2.04
DDR48YMR173W RFC3P38629 340 aa2.28□□□□□ -2.04
DDR48YMR173W UTP9P38882 575 aaKnown RBP2.28□□□□□ -2.04
DDR48YMR173W DOT5P40553 215 aa2.28□□□□□ -2.04
DDR48YMR173W SAS2P40963 338 aa2.28□□□□□ -2.04
DDR48YMR173W FRE4P53746 719 aa2.28□□□□□ -2.04
DDR48YMR173W SYF1Q04048 859 aaPredicted RBP2.28□□□□□ -2.04
DDR48YMR173W SKI7Q08491 747 aaPredicted RBP2.28□□□□□ -2.04
DDR48YMR173W SNX3Q08826 162 aaKnown RBP2.28□□□□□ -2.04
DDR48YMR173W ORT1Q12375 292 aa2.28□□□□□ -2.04
DDR48YMR173W SLY1P22213 666 aa2.27□□□□□ -2.05
DDR48YMR173W YHR054CP38780 354 aa2.27□□□□□ -2.05
DDR48YMR173W YJR011CP47086 261 aaPredicted RBP2.27□□□□□ -2.05
DDR48YMR173W YBL111CQ3E7Y5 667 aa2.27□□□□□ -2.05
DDR48YMR173W CTR86P25355 563 aa2.26□□□□□ -2.05
DDR48YMR173W IDH2P28241 369 aaKnown RBP2.26□□□□□ -2.05
DDR48YMR173W PCF11P39081 626 aaPredicted RBP2.26□□□□□ -2.05
DDR48YMR173W YJR085CP47131 105 aaKnown RBP2.26□□□□□ -2.05
DDR48YMR173W GRX6Q12438 231 aa2.26□□□□□ -2.05
DDR48YMR173W RPI1P23250 407 aaKnown RBP2.25□□□□□ -2.05
DDR48YMR173W GEX1P25596 615 aa2.25□□□□□ -2.05
DDR48YMR173W SIN4P32259 974 aa2.25□□□□□ -2.05
DDR48YMR173W NPL6P32832 435 aa2.25□□□□□ -2.05
DDR48YMR173W AIM10P39965 576 aaKnown RBP2.25□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms