RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	PEP4	P07267	405 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	RAP1	P11938	827 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	PRP6	P19735	899 aa	Predicted RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	PET18	P25362	215 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	RHB1	P25378	209 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	YJU2	P28320	278 aa	Predicted RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	MRP4	P32902	394 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	RPT5	P33297	434 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	GMH1	P36125	273 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	PPS1	P38148	807 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	GPI16	P38875	610 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	YMR147W	P40218	223 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	GCD14	P46959	383 aa	Predicted RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	ASN2	P49090	572 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	YGL242C	P53066	181 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	PIB2	P53191	635 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	MPP6	P53725	186 aa	Predicted RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	ADE13	Q05911	482 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	MDM30	Q05930	598 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	POS5	Q06892	414 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	THP1	Q08231	455 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	RRD2	Q12461	358 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	SRN2	Q99176	213 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	GCN2	P15442	1659 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	ALG7	P07286	448 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	ERG11	P10614	530 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	GAL3	P13045	520 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	SGV1	P23293	657 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	COT1	P32798	439 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	TRM2	P33753	639 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	MTR2	P34232	184 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	DEF1	P35732	738 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	TPO5	P36029	618 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	AIM3	P38266	947 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	CBR1	P38626	284 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	ULP2	P40537	1034 aa	Predicted RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	IAH1	P41734	238 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	YHC3	P47040	408 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	YTP1	P53584	459 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	HEF3	P53978	1044 aa	Known RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	RNT1	Q02555	471 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	CSI1	Q04368	295 aa		4.24	□□□□□ -1.73
SOF1	YLL011W	RKM1	Q08961	583 aa	Predicted RBP	4.24	□□□□□ -1.73
SOF1	YLL011W	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.23	□□□□□ -1.73
SOF1	YLL011W	ATP10	P18496	279 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	TKL1	P23254	680 aa	Known RBP	4.23	□□□□□ -1.73
SOF1	YLL011W	SIN4	P32259	974 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	HMX1	P32339	317 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	ECM25	P32525	599 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
SOF1	YLL011W	LIP5	P32875	414 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	SHP1	P34223	423 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	SPP381	P38282	291 aa	Predicted RBP	4.23	□□□□□ -1.73
SOF1	YLL011W	DED81	P38707	554 aa	Known RBP	4.23	□□□□□ -1.73
SOF1	YLL011W	END3	P39013	349 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	ARG2	P40360	574 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	NDC80	P40460	691 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	YFL015C	P43578	164 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	LOC1	P43586	204 aa	Predicted RBP	4.23	□□□□□ -1.73
SOF1	YLL011W	LIA1	P47120	325 aa	Known RBP	4.23	□□□□□ -1.73
SOF1	YLL011W	IPK1	Q06667	281 aa		4.23	□□□□□ -1.73
SOF1	YLL011W	NCE102	Q12207	173 aa	RIP-Chip data	4.23	□□□□□ -1.73	not detected
SOF1	YLL011W	ADE5,7	P07244	802 aa	Known RBP	4.22	□□□□□ -1.73
SOF1	YLL011W	NFT1	P0CE68	1218 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	MRP2	P10663	115 aa	Predicted RBP	4.22	□□□□□ -1.73
SOF1	YLL011W	SEC62	P21825	274 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	STE11	P23561	717 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	RAD51	P25454	400 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	YKL070W	P36087	169 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	DUG2	P38149	878 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	KAP104	P38217	918 aa	Known RBP	4.22	□□□□□ -1.73
SOF1	YLL011W	OLA1	P38219	394 aa	Known RBP	4.22	□□□□□ -1.73
SOF1	YLL011W	EFM2	P38347	419 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	RFC3	P38629	340 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	BZZ1	P38822	633 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	TOM71	P38825	639 aa	Known RBP	4.22	□□□□□ -1.73
SOF1	YLL011W	MIT1	P40002	666 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	TAX4	P47030	604 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	YGL185C	P53100	379 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	YGL114W	P53134	725 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	RIM8	P53179	542 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	DUG3	P53871	357 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	SMX3	P54999	86 aa	Predicted RBP	4.22	□□□□□ -1.73
SOF1	YLL011W	YVH1	Q02256	364 aa	Known RBP	4.22	□□□□□ -1.73
SOF1	YLL011W	STD1	Q02794	444 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	RAD34	Q06665	692 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	YLR049C	Q12110	428 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	NTO1	Q12311	748 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	LDB17	Q12342	491 aa		4.22	□□□□□ -1.73
SOF1	YLL011W	SEC3	P33332	1336 aa	Known RBP	4.22	□□□□□ -1.73
SOF1	YLL011W	YER145C-A	A0A023PYF4	145 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	PPR1	P07272	904 aa	Predicted RBP	4.21	□□□□□ -1.74
SOF1	YLL011W	RNR2	P09938	399 aa	Known RBP	4.21	□□□□□ -1.74
SOF1	YLL011W	UGA1	P17649	471 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	CDC42	P19073	191 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	CNA1	P23287	553 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	PSO2	P30620	661 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	SAC1	P32368	623 aa	Known RBP	4.21	□□□□□ -1.74
SOF1	YLL011W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
SOF1	YLL011W	YSC83	P32792	385 aa		4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 31.4 ms