RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeast

Gene UBC6, Length 753 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC6	YER100W	LIN1	P38852	340 aa	Predicted RBP	4.87	□□□□□ -1.63
UBC6	YER100W	QRI1	P43123	477 aa	Known RBP	4.87	□□□□□ -1.63
UBC6	YER100W	LOC1	P43586	204 aa	Predicted RBP	4.87	□□□□□ -1.63
UBC6	YER100W	YIP5	P53108	310 aa		4.87	□□□□□ -1.63
UBC6	YER100W	PIB2	P53191	635 aa		4.87	□□□□□ -1.63
UBC6	YER100W	NUP100	Q02629	959 aa		4.87	□□□□□ -1.63
UBC6	YER100W	YLH47	Q06493	454 aa		4.87	□□□□□ -1.63
UBC6	YER100W	PFA4	Q12006	378 aa		4.87	□□□□□ -1.63
UBC6	YER100W	RRI1	Q12468	440 aa		4.87	□□□□□ -1.63
UBC6	YER100W	ARP6	Q12509	438 aa		4.87	□□□□□ -1.63
UBC6	YER100W	EDE1	P34216	1381 aa		4.87	□□□□□ -1.63
UBC6	YER100W	CBP2	P03874	630 aa	Predicted RBP	4.86	□□□□□ -1.63
UBC6	YER100W	GCD2	P12754	651 aa	Predicted RBP	4.86	□□□□□ -1.63
UBC6	YER100W	RPS2	P25443	254 aa	Known RBP	4.86	□□□□□ -1.63
UBC6	YER100W	GID7	P25569	745 aa		4.86	□□□□□ -1.63
UBC6	YER100W	SMY1	P32364	656 aa	Known RBP	4.86	□□□□□ -1.63
UBC6	YER100W	PPQ1	P32945	549 aa		4.86	□□□□□ -1.63
UBC6	YER100W	FLO10	P36170	1169 aa		4.86	□□□□□ -1.63
UBC6	YER100W	YBL028C	P38202	106 aa		4.86	□□□□□ -1.63
UBC6	YER100W	YHR131C	P38835	850 aa		4.86	□□□□□ -1.63
UBC6	YER100W	SPC97	P38863	823 aa		4.86	□□□□□ -1.63
UBC6	YER100W	GPI16	P38875	610 aa		4.86	□□□□□ -1.63
UBC6	YER100W	VPS45	P38932	577 aa		4.86	□□□□□ -1.63
UBC6	YER100W	IRC24	P40580	263 aa		4.86	□□□□□ -1.63
UBC6	YER100W	PAC11	P40960	533 aa		4.86	□□□□□ -1.63
UBC6	YER100W	TAX4	P47030	604 aa		4.86	□□□□□ -1.63
UBC6	YER100W	MPS2	P53159	387 aa		4.86	□□□□□ -1.63
UBC6	YER100W	GPI1	P53306	609 aa		4.86	□□□□□ -1.63
UBC6	YER100W	DSL1	P53847	754 aa		4.86	□□□□□ -1.63
UBC6	YER100W	YIL002W-A	Q3E7Z5	69 aa		4.86	□□□□□ -1.63
UBC6	YER100W	HIS4	P00815	799 aa	Known RBP	4.85	□□□□□ -1.63
UBC6	YER100W	MES1	P00958	751 aa	Known RBP	4.85	□□□□□ -1.63
UBC6	YER100W	STE3	P06783	470 aa		4.85	□□□□□ -1.63
UBC6	YER100W	PET18	P25362	215 aa		4.85	□□□□□ -1.63
UBC6	YER100W	KAP104	P38217	918 aa	Known RBP	4.85	□□□□□ -1.63
UBC6	YER100W	PCF11	P39081	626 aa	Predicted RBP	4.85	□□□□□ -1.63
UBC6	YER100W	YAL037W	P39728	267 aa		4.85	□□□□□ -1.63
UBC6	YER100W	SSO2	P39926	295 aa		4.85	□□□□□ -1.63
UBC6	YER100W	TRS85	P46944	698 aa		4.85	□□□□□ -1.63
UBC6	YER100W	BRO1	P48582	844 aa		4.85	□□□□□ -1.63
UBC6	YER100W	ROG1	P53118	685 aa		4.85	□□□□□ -1.63
UBC6	YER100W	ATP23	P53722	227 aa		4.85	□□□□□ -1.63
UBC6	YER100W	IDP3	P53982	420 aa	Known RBP	4.85	□□□□□ -1.63
UBC6	YER100W	EGD1	Q02642	157 aa	Known RBP	4.85	□□□□□ -1.63
UBC6	YER100W	EKI1	Q03764	534 aa		4.85	□□□□□ -1.63
UBC6	YER100W	URH1	Q04179	340 aa		4.85	□□□□□ -1.63
UBC6	YER100W	GAL4	P04386	881 aa		4.84	□□□□□ -1.63
UBC6	YER100W	THR4	P16120	514 aa	Known RBP	4.84	□□□□□ -1.63
UBC6	YER100W	URE2	P23202	354 aa	Known RBP	4.84	□□□□□ -1.63
UBC6	YER100W	GRR1	P24814	1151 aa		4.84	□□□□□ -1.63
UBC6	YER100W	ECM25	P32525	599 aa		4.84	□□□□□ -1.63
UBC6	YER100W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
UBC6	YER100W	SPC34	P36131	295 aa		4.84	□□□□□ -1.63
UBC6	YER100W	CSM2	P40465	213 aa		4.84	□□□□□ -1.63
UBC6	YER100W	IAH1	P41734	238 aa		4.84	□□□□□ -1.63
UBC6	YER100W	RPN14	P53196	417 aa		4.84	□□□□□ -1.63
UBC6	YER100W	YMR111C	Q04461	462 aa	Predicted RBP	4.84	□□□□□ -1.63
UBC6	YER100W	IVY1	Q04934	453 aa		4.84	□□□□□ -1.63
UBC6	YER100W	ECI1	Q05871	280 aa		4.84	□□□□□ -1.63
UBC6	YER100W	BNA5	Q05979	453 aa		4.84	□□□□□ -1.63
UBC6	YER100W	DIC1	Q06143	298 aa		4.84	□□□□□ -1.63
UBC6	YER100W	PHO92	Q06390	306 aa		4.84	□□□□□ -1.63
UBC6	YER100W	CDC37	P06101	506 aa	Known RBP	4.83	□□□□□ -1.64
UBC6	YER100W	ERG11	P10614	530 aa		4.83	□□□□□ -1.64
UBC6	YER100W	SAG1	P20840	650 aa		4.83	□□□□□ -1.64
UBC6	YER100W	BUB3	P26449	341 aa		4.83	□□□□□ -1.64
UBC6	YER100W	PSO2	P30620	661 aa		4.83	□□□□□ -1.64
UBC6	YER100W	PHD1	P36093	366 aa		4.83	□□□□□ -1.64
UBC6	YER100W	QDR3	P38227	689 aa		4.83	□□□□□ -1.64
UBC6	YER100W	INM1	P38710	295 aa		4.83	□□□□□ -1.64
UBC6	YER100W	RRP4	P38792	359 aa	Known RBP	4.83	□□□□□ -1.64
UBC6	YER100W	MNL1	P38888	796 aa		4.83	□□□□□ -1.64
UBC6	YER100W	VPS25	P47142	202 aa		4.83	□□□□□ -1.64
UBC6	YER100W	RTT102	P53330	157 aa		4.83	□□□□□ -1.64
UBC6	YER100W	SLD5	Q03406	294 aa		4.83	□□□□□ -1.64
UBC6	YER100W	MRPL1	Q04599	285 aa		4.83	□□□□□ -1.64
UBC6	YER100W	GLO2	Q05584	274 aa		4.83	□□□□□ -1.64
UBC6	YER100W	THI20	Q08224	551 aa		4.83	□□□□□ -1.64
UBC6	YER100W	AAD15	Q08361	143 aa		4.83	□□□□□ -1.64
UBC6	YER100W	ATG34	Q12292	412 aa		4.83	□□□□□ -1.64
UBC6	YER100W	PNS1	Q12412	539 aa		4.83	□□□□□ -1.64
UBC6	YER100W	NFT1	P0CE68	1218 aa		4.82	□□□□□ -1.64
UBC6	YER100W	SAM1	P10659	382 aa	Known RBP	4.82	□□□□□ -1.64
UBC6	YER100W	MBR1	P23493	339 aa		4.82	□□□□□ -1.64
UBC6	YER100W	RAD57	P25301	460 aa		4.82	□□□□□ -1.64
UBC6	YER100W	CTR86	P25355	563 aa		4.82	□□□□□ -1.64
UBC6	YER100W	APE2	P32454	952 aa	Known RBP	4.82	□□□□□ -1.64
UBC6	YER100W	CYS4	P32582	507 aa	Known RBP	4.82	□□□□□ -1.64
UBC6	YER100W	YSC83	P32792	385 aa		4.82	□□□□□ -1.64
UBC6	YER100W	YPK3	P38070	525 aa		4.82	□□□□□ -1.64
UBC6	YER100W	ATP3	P38077	311 aa	Known RBP	4.82	□□□□□ -1.64
UBC6	YER100W	RTT107	P38850	1070 aa		4.82	□□□□□ -1.64
UBC6	YER100W	MNN9	P39107	395 aa	Known RBP	4.82	□□□□□ -1.64
UBC6	YER100W	VRG4	P40107	337 aa		4.82	□□□□□ -1.64
UBC6	YER100W	CFD1	P40558	293 aa		4.82	□□□□□ -1.64
UBC6	YER100W	SNO3	P43544	222 aa		4.82	□□□□□ -1.64
UBC6	YER100W	YFR016C	P43597	1233 aa	Known RBP	4.82	□□□□□ -1.64
UBC6	YER100W	YNL181W	P53878	407 aa		4.82	□□□□□ -1.64
UBC6	YER100W	GIP3	Q03016	1276 aa		4.82	□□□□□ -1.64
UBC6	YER100W	YDR387C	Q04162	555 aa		4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms