RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	UNG1	P12887	359 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	MED8	P38304	223 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	ERV46	P39727	415 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	MDJ2	P42834	146 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	PRM10	P42946	383 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	KEL2	P50090	882 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	RTS3	P53289	263 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	GPI1	P53306	609 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	COS6	P53344	381 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	HFD1	Q04458	532 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	PDR8	Q06149	701 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	GMC2	Q06201	188 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	REX4	Q08237	289 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	RRP40	Q08285	240 aa	Known RBP	10.27	□□□□□ -0.77
VPS60	YDR486C	YOL107W	Q12239	342 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	RRP12	Q12754	1228 aa	Known RBP	10.27	□□□□□ -0.77
VPS60	YDR486C	RPS17A	P02407	136 aa	Known RBP	10.26	□□□□□ -0.77
VPS60	YDR486C	ALG7	P07286	448 aa		10.26	□□□□□ -0.77
VPS60	YDR486C	RPL1A	P0CX43	217 aa	Known RBP	10.26	□□□□□ -0.77
VPS60	YDR486C	RPL1B	P0CX44	217 aa	Known RBP	10.26	□□□□□ -0.77
VPS60	YDR486C	RPS17B	P14127	136 aa	Known RBP	10.26	□□□□□ -0.77
VPS60	YDR486C	CAT2	P32796	670 aa	Known RBP	10.26	□□□□□ -0.77
VPS60	YDR486C	ASC1	P38011	319 aa	Known RBP	10.26	□□□□□ -0.77
VPS60	YDR486C	MAP2	P38174	421 aa	Known RBP	10.26	□□□□□ -0.77
VPS60	YDR486C	ECM10	P39987	644 aa		10.26	□□□□□ -0.77
VPS60	YDR486C	HMO1	Q03973	246 aa	Known RBP	10.26	□□□□□ -0.77
VPS60	YDR486C	YLL007C	Q07799	665 aa		10.26	□□□□□ -0.77
VPS60	YDR486C	YPR064W	Q12492	139 aa		10.26	□□□□□ -0.77
VPS60	YDR486C	LAG2	Q92325	660 aa		10.26	□□□□□ -0.77
VPS60	YDR486C	TY4B-P	A0A0B7P3V8	1104 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	CAN1	P04817	590 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	MST1	P07236	462 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	PTP1	P25044	335 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	ERG1	P32476	496 aa	Known RBP	10.25	□□□□□ -0.77
VPS60	YDR486C	SFA1	P32771	386 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	DSS1	P39112	969 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	MTW1	P39731	289 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	PMT4	P46971	762 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	YPL071C	Q02864	156 aa		10.25	□□□□□ -0.77
VPS60	YDR486C	SVL3	Q03088	825 aa	Known RBP	10.25	□□□□□ -0.77
VPS60	YDR486C	DAP2	P18962	818 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	YAP1	P19880	650 aa	Known RBP	10.24	□□□□□ -0.77
VPS60	YDR486C	EHT1	P38295	451 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	YHR112C	P38716	378 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	YHR218W	P38899	603 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	FET5	P43561	622 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	YGR016W	P53209	190 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	MSC1	Q03104	513 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	SSQ1	Q05931	657 aa	Predicted RBP	10.24	□□□□□ -0.77
VPS60	YDR486C	STP3	Q05937	343 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	BNA5	Q05979	453 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	ULA1	Q12059	462 aa		10.24	□□□□□ -0.77
VPS60	YDR486C	RPL17A	P05740	184 aa	Known RBP	10.23	□□□□□ -0.77
VPS60	YDR486C	BCY1	P07278	416 aa	Known RBP	10.23	□□□□□ -0.77
VPS60	YDR486C	YAK1	P14680	807 aa		10.23	□□□□□ -0.77
VPS60	YDR486C	CWP1	P28319	239 aa		10.23	□□□□□ -0.77
VPS60	YDR486C	FAA2	P39518	744 aa		10.23	□□□□□ -0.77
VPS60	YDR486C	PAC11	P40960	533 aa		10.23	□□□□□ -0.77
VPS60	YDR486C	PSA1	P41940	361 aa	Known RBP	10.23	□□□□□ -0.77
VPS60	YDR486C	RPL17B	P46990	184 aa	Known RBP	10.23	□□□□□ -0.77
VPS60	YDR486C	RAD17	P48581	401 aa		10.23	□□□□□ -0.77
VPS60	YDR486C	YGR250C	P53316	781 aa	Known RBP	10.23	□□□□□ -0.77
VPS60	YDR486C	ESF2	P53743	316 aa	Known RBP	10.23	□□□□□ -0.77
VPS60	YDR486C	GAD1	Q04792	585 aa		10.23	□□□□□ -0.77
VPS60	YDR486C	OPT2	Q06593	877 aa		10.23	□□□□□ -0.77
VPS60	YDR486C	PUN1	Q06991	263 aa		10.23	□□□□□ -0.77
VPS60	YDR486C	PRO1	P32264	428 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	SKG1	P36169	355 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	MNN2	P38069	597 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	BNA4	P38169	460 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	BEM4	P39011	633 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	FMP33	P46998	180 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	YJL043W	P47053	257 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	ROG1	P53118	685 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	MFG1	Q07684	458 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	COS7	Q07788	383 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	XYL2	Q07993	356 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	PUS9	Q12069	462 aa		10.22	□□□□□ -0.77
VPS60	YDR486C	POL2	P21951	2222 aa	Known RBP	10.22	□□□□□ -0.77
VPS60	YDR486C	CBP2	P03874	630 aa	Predicted RBP	10.21	□□□□□ -0.77
VPS60	YDR486C	STE7	P06784	515 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	UGP1	P32861	499 aa	Known RBP	10.21	□□□□□ -0.77
VPS60	YDR486C	SSO1	P32867	290 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	AST1	P35183	429 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	STP2	P38704	541 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	NEO1	P40527	1151 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	UGO1	Q03327	502 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	BOP2	Q06150	570 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	IRC13	Q08630	104 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	NSI1	Q12457	570 aa		10.21	□□□□□ -0.77
VPS60	YDR486C	PRP2	P20095	876 aa	Predicted RBP	10.2	□□□□□ -0.78
VPS60	YDR486C	HOG1	P32485	435 aa		10.2	□□□□□ -0.78
VPS60	YDR486C	NUP2	P32499	720 aa		10.2	□□□□□ -0.78
VPS60	YDR486C	SUI1	P32911	108 aa	Known RBP	10.2	□□□□□ -0.78
VPS60	YDR486C	RCK1	P38622	512 aa		10.2	□□□□□ -0.78
VPS60	YDR486C	MNL1	P38888	796 aa		10.2	□□□□□ -0.78
VPS60	YDR486C	MNN9	P39107	395 aa	Known RBP	10.2	□□□□□ -0.78
VPS60	YDR486C	DLD3	P39976	496 aa	Known RBP	10.2	□□□□□ -0.78
VPS60	YDR486C	LAS21	P40367	830 aa		10.2	□□□□□ -0.78
VPS60	YDR486C	ARF3	P40994	183 aa	RIP-Chip data	10.2	□□□□□ -0.78	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms