RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C SPB1P25582 841 aaPredicted RBP2.5□□□□□ -2.01
SNU56YDR240C AFG1P32317 509 aa2.5□□□□□ -2.01
SNU56YDR240C ECM25P32525 599 aa2.5□□□□□ -2.01
SNU56YDR240C MNS1P32906 549 aa2.5□□□□□ -2.01
SNU56YDR240C MSG5P38590 489 aa2.5□□□□□ -2.01
SNU56YDR240C YEL057CP39983 233 aa2.5□□□□□ -2.01
SNU56YDR240C DOT5P40553 215 aa2.5□□□□□ -2.01
SNU56YDR240C IMH1Q06704 911 aaKnown RBP2.5□□□□□ -2.01
SNU56YDR240C SGT1Q08446 395 aa2.5□□□□□ -2.01
SNU56YDR240C ATG29Q12092 213 aa2.5□□□□□ -2.01
SNU56YDR240C HIS4P00815 799 aaKnown RBP2.49□□□□□ -2.01
SNU56YDR240C SPS4P09937 338 aa2.49□□□□□ -2.01
SNU56YDR240C IMP2'P32351 346 aa2.49□□□□□ -2.01
SNU56YDR240C THI2P38141 450 aa2.49□□□□□ -2.01
SNU56YDR240C VID24P38263 362 aa2.49□□□□□ -2.01
SNU56YDR240C CCT2P39076 527 aaKnown RBP2.49□□□□□ -2.01
SNU56YDR240C VTC2P43585 828 aa2.49□□□□□ -2.01
SNU56YDR240C YGR149WP48236 432 aa2.49□□□□□ -2.01
SNU56YDR240C PCP1P53259 346 aa2.49□□□□□ -2.01
SNU56YDR240C ARE2P53629 642 aaKnown RBP2.49□□□□□ -2.01
SNU56YDR240C CWC25P53854 179 aaKnown RBP2.49□□□□□ -2.01
SNU56YDR240C PPM1Q04081 328 aa2.49□□□□□ -2.01
SNU56YDR240C TSA2Q04120 196 aa2.49□□□□□ -2.01
SNU56YDR240C HSP31Q04432 237 aa2.49□□□□□ -2.01
SNU56YDR240C NIP100P33420 868 aa2.48□□□□□ -2.01
SNU56YDR240C HXT14P42833 540 aa2.48□□□□□ -2.01
SNU56YDR240C YNR048WP53740 393 aa2.48□□□□□ -2.01
SNU56YDR240C HXT11P54862 567 aa2.48□□□□□ -2.01
SNU56YDR240C RQC1Q05468 723 aaKnown RBP2.48□□□□□ -2.01
SNU56YDR240C YML133CQ03099 1374 aa2.48□□□□□ -2.01
SNU56YDR240C YLL067CQ07888 1374 aa2.48□□□□□ -2.01
SNU56YDR240C YLL066CQ99208 1374 aa2.48□□□□□ -2.01
SNU56YDR240C TRP1P00912 224 aa2.47□□□□□ -2.01
SNU56YDR240C ARG4P04076 463 aaPredicted RBP2.47□□□□□ -2.01
SNU56YDR240C GPH1P06738 902 aaKnown RBP2.47□□□□□ -2.01
SNU56YDR240C PRP21P32524 280 aaPredicted RBP2.47□□□□□ -2.01
SNU56YDR240C HCS1P34243 683 aa2.47□□□□□ -2.01
SNU56YDR240C MTM1P53320 366 aa2.47□□□□□ -2.01
SNU56YDR240C HAL1Q01766 294 aa2.47□□□□□ -2.01
SNU56YDR240C RPT6Q01939 405 aaKnown RBP2.47□□□□□ -2.01
SNU56YDR240C IRC25Q07951 179 aa2.47□□□□□ -2.01
SNU56YDR240C YPR022CQ12139 1133 aa2.47□□□□□ -2.01
SNU56YDR240C YLR278CQ05854 1341 aa2.47□□□□□ -2.01
SNU56YDR240C TOP1P04786 769 aa2.46□□□□□ -2.02
SNU56YDR240C NFT1P0CE68 1218 aa2.46□□□□□ -2.02
SNU56YDR240C RPS8AP0CX39 200 aaKnown RBP2.46□□□□□ -2.02
SNU56YDR240C RPS8BP0CX40 200 aaKnown RBP2.46□□□□□ -2.02
SNU56YDR240C GFD2P25370 566 aaKnown RBP2.46□□□□□ -2.02
SNU56YDR240C POP5P28005 173 aa2.46□□□□□ -2.02
SNU56YDR240C APE2P32454 952 aaKnown RBP2.46□□□□□ -2.02
SNU56YDR240C KKQ8P36004 724 aa2.46□□□□□ -2.02
SNU56YDR240C MRP21P38175 177 aa2.46□□□□□ -2.02
SNU56YDR240C UTP9P38882 575 aaKnown RBP2.46□□□□□ -2.02
SNU56YDR240C MET18P40469 1032 aa2.46□□□□□ -2.02
SNU56YDR240C VMA13P41807 478 aaKnown RBP2.46□□□□□ -2.02
SNU56YDR240C YDR387CQ04162 555 aa2.46□□□□□ -2.02
SNU56YDR240C MET8P15807 274 aa2.45□□□□□ -2.02
SNU56YDR240C IDH2P28241 369 aaKnown RBP2.45□□□□□ -2.02
SNU56YDR240C KAR9P32526 644 aa2.45□□□□□ -2.02
SNU56YDR240C MUD1P32605 298 aaKnown RBP2.45□□□□□ -2.02
SNU56YDR240C MID2P36027 376 aa2.45□□□□□ -2.02
SNU56YDR240C SPO22P40511 975 aa2.45□□□□□ -2.02
SNU56YDR240C JJJ1P53863 590 aa2.45□□□□□ -2.02
SNU56YDR240C SVL3Q03088 825 aaKnown RBP2.45□□□□□ -2.02
SNU56YDR240C SNX3Q08826 162 aaKnown RBP2.45□□□□□ -2.02
SNU56YDR240C TEF1P02994 458 aaKnown RBP2.45□□□□□ -2.02
SNU56YDR240C HSP26P15992 214 aaKnown RBP RIP-Chip data2.45□□□□□ -2.02not detected
SNU56YDR240C RPI1P23250 407 aaKnown RBP2.45□□□□□ -2.02
SNU56YDR240C PCL1P24867 279 aa2.45□□□□□ -2.02
SNU56YDR240C ITR1P30605 584 aa2.45□□□□□ -2.02
SNU56YDR240C PMT1P33775 817 aa2.45□□□□□ -2.02
SNU56YDR240C UTH1P36135 365 aa2.45□□□□□ -2.02
SNU56YDR240C YBR137WP38276 179 aa2.45□□□□□ -2.02
SNU56YDR240C YHR054CP38780 354 aa2.45□□□□□ -2.02
SNU56YDR240C LYS1P38998 373 aaRIP-Chip data2.45□□□□□ -2.02not detected
SNU56YDR240C FRE4P53746 719 aa2.45□□□□□ -2.02
SNU56YDR240C RIM20Q12033 661 aa2.45□□□□□ -2.02
SNU56YDR240C RIP1P08067 215 aa2.44□□□□□ -2.02
SNU56YDR240C SLY1P22213 666 aa2.44□□□□□ -2.02
SNU56YDR240C OTU2P38747 307 aaKnown RBP2.44□□□□□ -2.02
SNU56YDR240C ARF3P40994 183 aaRIP-Chip data2.44□□□□□ -2.02not detected
SNU56YDR240C GAB1P41733 394 aa2.44□□□□□ -2.02
SNU56YDR240C RTP1Q12751 981 aa2.44□□□□□ -2.02
SNU56YDR240C NUP2P32499 720 aa2.43□□□□□ -2.02
SNU56YDR240C VHC1P38329 1120 aa2.43□□□□□ -2.02
SNU56YDR240C CUE5Q08412 411 aaKnown RBP2.43□□□□□ -2.02
SNU56YDR240C YDL012CQ12489 107 aa2.43□□□□□ -2.02
SNU56YDR240C CYC3P06182 269 aa2.42□□□□□ -2.02
SNU56YDR240C SEC63P14906 663 aa2.42□□□□□ -2.02
SNU56YDR240C SNT1P25357 1226 aa2.42□□□□□ -2.02
SNU56YDR240C GPI10P30777 616 aa2.42□□□□□ -2.02
SNU56YDR240C PCF11P39081 626 aaPredicted RBP2.42□□□□□ -2.02
SNU56YDR240C UTP18P40362 594 aaPredicted RBP2.42□□□□□ -2.02
SNU56YDR240C ESL1P40456 1118 aa2.42□□□□□ -2.02
SNU56YDR240C BRO1P48582 844 aa2.42□□□□□ -2.02
SNU56YDR240C KTR5P53966 522 aaPredicted RBP2.42□□□□□ -2.02
SNU56YDR240C SYF1Q04048 859 aaPredicted RBP2.42□□□□□ -2.02
SNU56YDR240C REX4Q08237 289 aa2.42□□□□□ -2.02
SNU56YDR240C SKI7Q08491 747 aaPredicted RBP2.42□□□□□ -2.02
SNU56YDR240C RMD5Q12508 421 aa2.42□□□□□ -2.02
Retrieved 100 of 5,963 RNA–protein pairs in 32.6 ms