RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ITGB5P18084 799 aa21.74■■□□□ 1.07
SQSTM1-216ENST00000626660 MTMR1Q13613 665 aa21.74■■□□□ 1.07
SQSTM1-216ENST00000626660 CCDC62Q6P9F0 684 aa21.74■■□□□ 1.07
SQSTM1-216ENST00000626660 NIPA1Q7RTP0 329 aa21.74■■□□□ 1.07
SQSTM1-216ENST00000626660 TLK2Q86UE8 772 aa21.74■■□□□ 1.07
SQSTM1-216ENST00000626660 GNEQ9Y223 722 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-216ENST00000626660 POTEFA5A3E0 1075 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 SPATA31C2B4DYI2 1134 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 DYNC1LI2O43237 492 aaPredicted RBP21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 ARIH2O95376 493 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 GH1P01241 217 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 LY6KQ17RY6 165 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 MCTP1Q6DN14 999 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 NEK8Q86SG6 692 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 RNF180Q86T96 592 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 PLA2G4DQ86XP0 818 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 OR6J1Q8NGC5 347 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 TNFRSF25Q93038 417 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 NAP1L4Q99733 375 aaKnown RBP21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 UPF3AQ9H1J1 476 aaKnown RBP21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 DDX41Q9UJV9 622 aaKnown RBP21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 SYNRGQ9UMZ2 1314 aa21.73■■□□□ 1.07
SQSTM1-216ENST00000626660 MEIS1O00470 390 aa21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 PGK1P00558 417 aa21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 C6orf222P0C671 652 aaPredicted RBP21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 CIITAP33076 1130 aa21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 GJA9P57773 515 aa21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 SETQ01105 290 aaPredicted RBP21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 NEDD9Q14511 834 aa21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 GJC2Q5T442 439 aaPredicted RBP21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 GIMAP8Q8ND71 665 aaPredicted RBP21.72■■□□□ 1.07
SQSTM1-216ENST00000626660 KBTBD13C9JR72 458 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 FAM86B1E9PN63 330 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 FAM86B2P0C5J1 330 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 UBA1P22314 1058 aaKnown RBP21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 SEMA3FQ13275 785 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 LETM2Q2VYF4 491 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 BRDTQ58F21 947 aaPredicted RBP21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 TMEM63BQ5T3F8 832 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 MOXD1Q6UVY6 613 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 NOSTRINQ8IVI9 506 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 DHX37Q8IY37 1157 aaKnown RBP21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 ANKLE1Q8NAG6 615 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 CYP2W1Q8TAV3 490 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 COPS5Q92905 334 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 KCNH7Q9NS40 1196 aa21.71■■□□□ 1.07
SQSTM1-216ENST00000626660 VPS37CA5D8V6 355 aaPredicted RBP21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 FAM205CA6NFA0 338 aa21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 ADAMTS4O75173 837 aa21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 GGPS1O95749 300 aa21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 GCFC2P16383 781 aaKnown RBP21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 EN2P19622 333 aaPredicted RBP21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 LAMC2Q13753 1193 aa21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 LRRC41Q15345 812 aa21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 PRR16Q569H4 304 aa21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 EARS2Q5JPH6 523 aaKnown RBP21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 SPRYD3Q8NCJ5 442 aa21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 SENP7Q9BQF6 1050 aa21.7■■□□□ 1.06
SQSTM1-216ENST00000626660 DOCK5Q9H7D0 1870 aa21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 IGLV3-22A0A075B6J6 115 aa21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 DNM1LO00429 736 aa21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 ZEB2O60315 1214 aa21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 U2AF2P26368 475 aaKnown RBP eCLIP21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 CPT1AP50416 773 aa21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 FSCN1Q16658 493 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 GNASQ5JWF2 1037 aa21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 CELF3Q5SZQ8 465 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 PCSK9Q8NBP7 692 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 MLXIPQ9HAP2 919 aa21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 PKD2L1Q9P0L9 805 aa21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 NOL7Q9UMY1 257 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-216ENST00000626660 CYP3A7-CYP3A51PA0A087WV96 503 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 KIF28PB7ZC32 967 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 CCNT1O60563 726 aaKnown RBP21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 FARP2O94887 1054 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 TDP2O95551 362 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 ARP10275 920 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 SYT1P21579 422 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 PTGS1P23219 599 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 CYP3A7P24462 503 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 CST5P28325 142 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 ANP32AP39687 249 aaKnown RBP21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 SP2Q02086 613 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 ARHGAP1Q07960 439 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 PPP4R3AQ6IN85 833 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 EMID1Q96A84 441 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 SDF4Q9BRK5 362 aa21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 DDX25Q9UHL0 483 aaKnown RBP21.68■■□□□ 1.06
SQSTM1-216ENST00000626660 EDIL3O43854 480 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 PDIA4P13667 645 aaKnown RBP21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 KCNA2P16389 499 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 NKX3-2P78367 333 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 BEX3Q00994 111 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 Q4G0T1 1027 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 MYSM1Q5VVJ2 828 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 METTL7BQ6UX53 244 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 CYFIP1Q7L576 1253 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 KLHDC9Q8NEP7 349 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 SPATA33Q96N06 139 aa21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 ZNF577Q9BSK1 485 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms