RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ATF2P15336 505 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 DDIT3P35638 169 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 NFX1Q12986 1120 aaKnown RBP12.39□□□□□ -0.43
CLIP1-219ENST00000620786 STXBP2Q15833 593 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 TXNRD1Q16881 649 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 NXNQ6DKJ4 435 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 ANKRD42Q8N9B4 389 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 GANCQ8TET4 914 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 IFT122Q9HBG6 1241 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 SAR1BQ9Y6B6 198 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 GOLGA8SH3BPF8 625 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 HEXIM1O94992 359 aaKnown RBP12.38□□□□□ -0.43
CLIP1-219ENST00000620786 H2AFZP0C0S5 128 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 GARSP41250 739 aaKnown RBP12.38□□□□□ -0.43
CLIP1-219ENST00000620786 H2AFVQ71UI9 128 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 CATSPER4Q7RTX7 472 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 CEP57Q86XR8 500 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 TCP11Q8WWU5 503 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.38□□□□□ -0.43
CLIP1-219ENST00000620786 FBXO40Q9UH90 709 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 ZNF148Q9UQR1 794 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 NCAPD2Q15021 1401 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 PPP6R2O75170 966 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 KRT10P13645 584 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 CLCN1P35523 988 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 ATP11AP98196 1134 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 SNRNP48Q6IEG0 339 aaKnown RBP12.38□□□□□ -0.43
CLIP1-219ENST00000620786 ZNF449Q6P9G9 518 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 SCARA5Q6ZMJ2 495 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 TTC30AQ86WT1 665 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 CCDC13Q8IYE1 715 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 FBXO18Q8NFZ0 1043 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 MCUR1Q96AQ8 359 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 OTUD5Q96G74 571 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 LMCD1Q9NZU5 365 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 SLC8A2Q9UPR5 921 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 PRPF3O43395 683 aaKnown RBP12.38□□□□□ -0.43
CLIP1-219ENST00000620786 ECE1P42892 770 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 TRIM11Q96F44 468 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 MMP19Q99542 508 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 SLITRK6Q9H5Y7 841 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 IRAK4Q9NWZ3 460 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 MINPP1Q9UNW1 487 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 MMP1P03956 469 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 CERKQ8TCT0 537 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 RNF139Q8WU17 664 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 HEXIM2Q96MH2 286 aaKnown RBP12.38□□□□□ -0.43
CLIP1-219ENST00000620786 MSTO1Q9BUK6 570 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 ZBBXA8MT70 800 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 GUCY2FP51841 1108 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 COPB1P53618 953 aaKnown RBP12.38□□□□□ -0.43
CLIP1-219ENST00000620786 GPSM2P81274 684 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 MESDQ14696 234 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 MFSD14CQ5VZR4 134 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 ELMOD1Q8N336 334 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 GIMAP8Q8ND71 665 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-219ENST00000620786 ZSWIM5Q9P217 1185 aa12.38□□□□□ -0.43
CLIP1-219ENST00000620786 IQCA1LA6NCM1 817 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 CD58P19256 250 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 U2AF2P26368 475 aaKnown RBP eCLIP12.37□□□□□ -0.431e-6■■■■□ 26
CLIP1-219ENST00000620786 PODNQ7Z5L7 613 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 PARVGQ9HBI0 331 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 SPON1Q9HCB6 807 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 FANCLQ9NW38 375 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 DENND3A2RUS2 1198 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 H7C1W4 665 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 JAK3P52333 1124 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 SURF1Q15526 300 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 CCNYQ8ND76 341 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 ARHGEF2Q92974 986 aaKnown RBP12.37□□□□□ -0.43
CLIP1-219ENST00000620786 FAM81BQ96LP2 452 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 DESI2Q9BSY9 194 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 CD209Q9NNX6 404 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 UBN1Q9NPG3 1134 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 STK17AQ9UEE5 414 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 INPP5FQ9Y2H2 1132 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 PRDM15P57071 1507 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-219ENST00000620786 ARHGAP31Q2M1Z3 1444 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 SGK1O00141 431 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 EEF2KMTQ96G04 330 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 MYO1FO00160 1098 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 PLA2G4BP0C869 781 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 MCAMP43121 646 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 KRT71Q3SY84 523 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 OR6B2Q6IFH4 312 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 ZNF653Q96CK0 615 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 DPH5Q9H2P9 285 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 DDX41Q9UJV9 622 aaKnown RBP12.37□□□□□ -0.43
CLIP1-219ENST00000620786 PTCH1Q13635 1447 aa12.37□□□□□ -0.43
CLIP1-219ENST00000620786 CYP2D6P10635 497 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 ARMCX2Q7L311 632 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 VSIG1Q86XK7 387 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 P2RX5Q93086 422 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 TUBGCP2Q9BSJ2 902 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 MTMR1Q13613 665 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 GPATCH11Q8N954 259 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 BRIP1Q9BX63 1249 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 TYW1Q9NV66 732 aaKnown RBP12.36□□□□□ -0.43
CLIP1-219ENST00000620786 PLEKHG2Q9H7P9 1386 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 RGS16O15492 202 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms