RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 JADE2Q9NQC1 790 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 CNTN2Q02246 1040 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 NT5DC1Q5TFE4 455 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 RRAGBQ5VZM2 374 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 XRRA1Q6P2D8 792 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 SASS6Q6UVJ0 657 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 ANKRD35Q8N283 1001 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 NSUN6Q8TEA1 469 aaKnown RBP16.06■□□□□ 0.16
USP39-220ENST00000613444 WDR11Q9BZH6 1224 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 CCDC39Q9UFE4 941 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 PCDHA5Q9Y5H7 936 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 PLXNB2O15031 1838 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 FAM155AB1AL88 458 aaPredicted RBP16.06■□□□□ 0.16
USP39-220ENST00000613444 NR3C2P08235 984 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 SLC10A3P09131 477 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 COPB2P35606 906 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 STAT6P42226 847 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 SARSP49591 514 aaKnown RBP16.06■□□□□ 0.16
USP39-220ENST00000613444 ECM1Q16610 540 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 HYIQ5T013 277 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 B3GNT9Q6UX72 402 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 OTOP1Q7RTM1 612 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 CEP57L1Q8IYX8 460 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 PLIN2Q99541 437 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 GRPEL1Q9HAV7 217 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 KCNH7Q9NS40 1196 aa16.06■□□□□ 0.16
USP39-220ENST00000613444 WDR81Q562E7 1941 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 TMEM119Q4V9L6 283 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 FAM133AQ8N9E0 248 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 SHCBP1Q8NEM2 672 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 DNERQ8NFT8 737 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 SNX29Q8TEQ0 813 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 SMCR8Q8TEV9 937 aaPredicted RBP16.05■□□□□ 0.16
USP39-220ENST00000613444 PORCNQ9H237 461 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 KBTBD4Q9NVX7 518 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 MORF4L1Q9UBU8 362 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 MCM3APO60318 1980 aa16.05■□□□□ 0.16
USP39-220ENST00000613444 IGF2BP3O00425 579 aaKnown RBP eCLIP16.04■□□□□ 0.16
USP39-220ENST00000613444 RGS20O76081 388 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 MYCLP12524 364 aaPredicted RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 AFMP43652 599 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 PPP2R5CQ13362 524 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 KRT79Q5XKE5 535 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 ZNF577Q9BSK1 485 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 DOCK5Q9H7D0 1870 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 AGO4Q9HCK5 861 aaKnown RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 BLOC1S4Q9NUP1 217 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 PLXNA1Q9UIW2 1896 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 HOOK1Q9UJC3 728 aaKnown RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 DNAJC25-GNG10A0A024R161 153 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 MANSC4A6NHS7 340 aaPredicted RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 IPO5O00410 1097 aaKnown RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 EML1O00423 815 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 DHX15O43143 795 aaKnown RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 CASP1P29466 404 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 CCND2P30279 289 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 GCLCP48506 637 aaPredicted RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 DPYDQ12882 1025 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 ZRSR1Q15695 479 aaKnown RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 LRCH2Q5VUJ6 765 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 ANKRD13CQ8N6S4 541 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 GPRC5AQ8NFJ5 357 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 STAMQ92783 540 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 CALML4Q96GE6 196 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 FGD4Q96M96 766 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 INPP4AQ96PE3 977 aaPredicted RBP16.04■□□□□ 0.16
USP39-220ENST00000613444 CUEDC2Q9H467 287 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 MROH8Q9H579 483 aa16.04■□□□□ 0.16
USP39-220ENST00000613444 SOWAHBA6NEL2 793 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 TOMM70O94826 608 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 FSTL1Q12841 308 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 SEMA3FQ13275 785 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 ITGB3BPQ13352 177 aaPredicted RBP16.03■□□□□ 0.16
USP39-220ENST00000613444 MTMR1Q13613 665 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 STX1AQ16623 288 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 ANO6Q4KMQ2 910 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 KCNK18Q7Z418 384 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 IWS1Q96ST2 819 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 PARK7Q99497 189 aaKnown RBP16.03■□□□□ 0.16
USP39-220ENST00000613444 RIT2Q99578 217 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 EFCC1Q9HA90 598 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 ADGRA2Q96PE1 1338 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 SLC26A4O43511 780 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 SPATA31C1P0DKV0 1188 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 BMP6P22004 513 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 EDNRBP24530 442 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 MRE11P49959 708 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 ALDH5A1P51649 535 aaPredicted RBP16.03■□□□□ 0.16
USP39-220ENST00000613444 NCAPH2Q6IBW4 605 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 C11orf57Q6ZUT1 292 aaPredicted RBP16.03■□□□□ 0.16
USP39-220ENST00000613444 RNF214Q8ND24 703 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 RASSF8Q8NHQ8 419 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 DNAJC25Q9H1X3 360 aa16.03■□□□□ 0.16
USP39-220ENST00000613444 DOCK3Q8IZD9 2030 aa16.02■□□□□ 0.16
USP39-220ENST00000613444 POTEB2H3BUK9 544 aa16.02■□□□□ 0.16
USP39-220ENST00000613444 BIN1O00499 593 aa16.02■□□□□ 0.16
USP39-220ENST00000613444 MED24O75448 989 aa16.02■□□□□ 0.16
USP39-220ENST00000613444 XRCC6P12956 609 aaKnown RBP eCLIP16.02■□□□□ 0.16
USP39-220ENST00000613444 DPCR1Q3MIW9 517 aa16.02■□□□□ 0.16
USP39-220ENST00000613444 HHIPL1Q96JK4 782 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms