RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SMPD1P17405 629 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 ATP2B1P20020 1258 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 PTGS1P23219 599 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 ICAM3P32942 547 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 RESTQ13127 1097 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 PKP1Q13835 747 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 LY6KQ17RY6 165 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 GNPTABQ3T906 1256 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 CEP55Q53EZ4 464 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 FOXD4L5Q5VV16 416 aaPredicted RBP9.74□□□□□ -0.85
NUP88-211ENST00000575976 CCDC62Q6P9F0 684 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 PLA2G4DQ86XP0 818 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 SCFD2Q8WU76 684 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 FOXD4L4Q8WXT5 416 aaPredicted RBP9.74□□□□□ -0.85
NUP88-211ENST00000575976 LENG1Q96BZ8 264 aaPredicted RBP9.74□□□□□ -0.85
NUP88-211ENST00000575976 GPRASP2Q96D09 838 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.74□□□□□ -0.85
NUP88-211ENST00000575976 DDX41Q9UJV9 622 aaKnown RBP9.74□□□□□ -0.85
NUP88-211ENST00000575976 COLQQ9Y215 455 aaPredicted RBP9.74□□□□□ -0.85
NUP88-211ENST00000575976 MRVI1Q9Y6F6 885 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 MCM3APO60318 1980 aa9.74□□□□□ -0.85
NUP88-211ENST00000575976 LRRC37A2A6NM11 1700 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 IGLV3-22A0A075B6J6 115 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 CYP3A7-CYP3A51PA0A087WV96 503 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 POTEFA5A3E0 1075 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 CCNT1O60563 726 aaKnown RBP9.73□□□□□ -0.85
NUP88-211ENST00000575976 ATP9AO75110 1047 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 TXNP10599 105 aaKnown RBP9.73□□□□□ -0.85
NUP88-211ENST00000575976 CYP3A7P24462 503 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 TOB1P50616 345 aaPredicted RBP9.73□□□□□ -0.85
NUP88-211ENST00000575976 SP2Q02086 613 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 TNFAIP2Q03169 654 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 MTMR1Q13613 665 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 TTLL4Q14679 1199 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 DUSP28Q4G0W2 176 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 PRR16Q569H4 304 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 GJC2Q5T442 439 aaPredicted RBP9.73□□□□□ -0.85
NUP88-211ENST00000575976 MOXD1Q6UVY6 613 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 NIPA1Q7RTP0 329 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 COPS5Q92905 334 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 LENG9Q96B70 501 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 MBOAT7Q96N66 472 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 UIMC1Q96RL1 719 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 RNF208Q9H0X6 261 aa9.73□□□□□ -0.85
NUP88-211ENST00000575976 PAK6Q9NQU5 681 aaPredicted RBP9.73□□□□□ -0.85
NUP88-211ENST00000575976 DDX20Q9UHI6 824 aaKnown RBP9.73□□□□□ -0.85
NUP88-211ENST00000575976 NOL7Q9UMY1 257 aaKnown RBP9.73□□□□□ -0.85
NUP88-211ENST00000575976 GNEQ9Y223 722 aaKnown RBP9.73□□□□□ -0.85
NUP88-211ENST00000575976 MAFGO15525 162 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 DYNC1LI2O43237 492 aaPredicted RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 SLC37A4O43826 429 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 SORBS3O60504 671 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 DUSP11O75319 330 aaKnown RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 ZSCAN22P10073 491 aaPredicted RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 TGFB3P10600 412 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 PDIA4P13667 645 aaKnown RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 GCFC2P16383 781 aaKnown RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 KCNA2P16389 499 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 DDIT3P35638 169 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 IRX5P78411 483 aaPredicted RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 NBR1Q14596 966 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 ZNF174Q15697 407 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 Q4G0T1 1027 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 TTC38Q5R3I4 469 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 LHX8Q68G74 356 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 PPP4R3AQ6IN85 833 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 FAM173BQ6P4H8 233 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 KCNV1Q6PIU1 500 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 CDHR1Q96JP9 859 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 DEFB118Q96PH6 123 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 NAP1L4Q99733 375 aaKnown RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 BCAS3Q9H6U6 928 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 AGO4Q9HCK5 861 aaKnown RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 KCNH7Q9NS40 1196 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 PKD2L1Q9P0L9 805 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 DDX25Q9UHL0 483 aaKnown RBP9.72□□□□□ -0.85
NUP88-211ENST00000575976 ZDHHC9Q9Y397 364 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 TRIOBPQ9H2D6 2365 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 MYH7BA7E2Y1 1941 aa9.72□□□□□ -0.85
NUP88-211ENST00000575976 NKRFO15226 690 aaKnown RBP eCLIP9.71□□□□□ -0.86
NUP88-211ENST00000575976 MSH4O15457 936 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 MSCO60682 206 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 BRD1O95696 1058 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 GGPS1O95749 300 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 F13A1P00488 732 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 PGK1P00558 417 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 GH1P01241 217 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 GJB1P08034 283 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 RARBP10826 455 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 UBA1P22314 1058 aaKnown RBP9.71□□□□□ -0.86
NUP88-211ENST00000575976 MCM7P33993 719 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 TRAPPC10P48553 1259 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 SETQ01105 290 aaPredicted RBP9.71□□□□□ -0.86
NUP88-211ENST00000575976 RILPL1Q5EBL4 403 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 CELF3Q5SZQ8 465 aaKnown RBP9.71□□□□□ -0.86
NUP88-211ENST00000575976 MYSM1Q5VVJ2 828 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 BRAPQ7Z569 592 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 DHX37Q8IY37 1157 aaKnown RBP9.71□□□□□ -0.86
NUP88-211ENST00000575976 OR6J1Q8NGC5 347 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 GJA10Q969M2 543 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms