RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 GRM4Q14833 912 aa24.47■■□□□ 1.51
VPS53-216ENST00000574029 TRIM71Q2Q1W2 868 aaKnown RBP24.47■■□□□ 1.51
VPS53-216ENST00000574029 CELF3Q5SZQ8 465 aaKnown RBP24.47■■□□□ 1.51
VPS53-216ENST00000574029 TRAF7Q6Q0C0 670 aa24.47■■□□□ 1.51
VPS53-216ENST00000574029 RIOX1Q9H6W3 641 aa24.47■■□□□ 1.51
VPS53-216ENST00000574029 REV3LO60673 3130 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 PDE4AP27815 886 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 TFF2Q03403 129 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 TRDNQ13061 729 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 TRAF1Q13077 416 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 AAK1Q2M2I8 961 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 TCTN1Q2MV58 587 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 HSDL1Q3SXM5 330 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 TTC22Q5TAA0 569 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 IL31RAQ8NI17 732 aa24.46■■□□□ 1.51
VPS53-216ENST00000574029 TRANK1O15050 2925 aa24.45■■□□□ 1.51
VPS53-216ENST00000574029 ABHD14A-ACY1A0A1B0GW23 586 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 CYP21A2P08686 494 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 TGFB3P10600 412 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 DEFB103AP81534 67 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 SP2Q02086 613 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 SKIV2LQ15477 1246 aaKnown RBP24.45■■□□□ 1.5
VPS53-216ENST00000574029 KRT40Q6A162 431 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 TMCO2Q7Z6W1 182 aaPredicted RBP24.45■■□□□ 1.5
VPS53-216ENST00000574029 HOMER1Q86YM7 354 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 WNT8BQ93098 351 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 SPATA33Q96N06 139 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 PIGSQ96S52 555 aa24.45■■□□□ 1.5
VPS53-216ENST00000574029 TCF20Q9UGU0 1960 aaKnown RBP24.45■■□□□ 1.5
VPS53-216ENST00000574029 PRRC2BQ5JSZ5 2229 aaKnown RBP24.45■■□□□ 1.5
VPS53-216ENST00000574029 LCHNA4D1U4 455 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 GCOM1H8Y6P7 765 aaPredicted RBP24.44■■□□□ 1.5
VPS53-216ENST00000574029 LPXNO60711 386 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 GGPS1O95749 300 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 POLR2MP0CAP2 368 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 UBA1P22314 1058 aaKnown RBP24.44■■□□□ 1.5
VPS53-216ENST00000574029 ZNF200P98182 395 aaPredicted RBP24.44■■□□□ 1.5
VPS53-216ENST00000574029 GRB10Q13322 594 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 HIC1Q14526 733 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 ZNF618Q5T7W0 954 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 SPRED2Q7Z698 418 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 C16orf70Q9BSU1 422 aa24.44■■□□□ 1.5
VPS53-216ENST00000574029 U3KPZ7 1027 aaPredicted RBP24.44■■□□□ 1.5
VPS53-216ENST00000574029 IFIT3O14879 490 aaKnown RBP24.43■■□□□ 1.5
VPS53-216ENST00000574029 CYTH3O43739 400 aa24.43■■□□□ 1.5
VPS53-216ENST00000574029 EFCAB14O75071 495 aa24.43■■□□□ 1.5
VPS53-216ENST00000574029 CCND2P30279 289 aa24.43■■□□□ 1.5
VPS53-216ENST00000574029 ZBED2Q9BTP6 218 aa24.43■■□□□ 1.5
VPS53-216ENST00000574029 SENP2Q9HC62 589 aa24.43■■□□□ 1.5
VPS53-216ENST00000574029 COG5Q9UP83 839 aa24.43■■□□□ 1.5
VPS53-216ENST00000574029 PNMA6FA0A0J9YX94 578 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 SORBS3O60504 671 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 GJB5O95377 273 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 KCNQ1P51787 676 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 PTH1RQ03431 593 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 TROAPQ12815 778 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 IKBKEQ14164 716 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 MBTPS1Q14703 1052 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 RUFY2Q8WXA3 655 aa24.42■■□□□ 1.5
VPS53-216ENST00000574029 GPKOWQ92917 476 aaPredicted RBP eCLIP24.42■■□□□ 1.5
VPS53-216ENST00000574029 ERICH2A1L162 156 aa24.41■■□□□ 1.5
VPS53-216ENST00000574029 CHMLP26374 656 aa24.41■■□□□ 1.5
VPS53-216ENST00000574029 SERINC5Q86VE9 423 aa24.41■■□□□ 1.5
VPS53-216ENST00000574029 FCHSD1Q86WN1 690 aa24.41■■□□□ 1.5
VPS53-216ENST00000574029 ZFP91Q96JP5 570 aaPredicted RBP24.41■■□□□ 1.5
VPS53-216ENST00000574029 NECAB3Q96P71 396 aaPredicted RBP24.41■■□□□ 1.5
VPS53-216ENST00000574029 RAD9AQ99638 391 aa24.41■■□□□ 1.5
VPS53-216ENST00000574029 FRMPD4Q14CM0 1322 aa24.4■■□□□ 1.5
VPS53-216ENST00000574029 COL9A1P20849 921 aa24.4■■□□□ 1.5
VPS53-216ENST00000574029 WTAPQ15007 396 aa24.4■■□□□ 1.5
VPS53-216ENST00000574029 NCOA7Q8NI08 942 aa24.4■■□□□ 1.5
VPS53-216ENST00000574029 MLXIPQ9HAP2 919 aa24.4■■□□□ 1.5
VPS53-216ENST00000574029 TAF6LQ9Y6J9 622 aa24.4■■□□□ 1.5
VPS53-216ENST00000574029 BAZ2BQ9UIF8 2168 aaKnown RBP24.4■■□□□ 1.5
VPS53-216ENST00000574029 EMSYQ7Z589 1322 aa24.39■■□□□ 1.5
VPS53-216ENST00000574029 E7EWF7 191 aa24.39■■□□□ 1.49
VPS53-216ENST00000574029 LGR5O75473 907 aa24.39■■□□□ 1.49
VPS53-216ENST00000574029 HOXC8P31273 242 aa24.39■■□□□ 1.49
VPS53-216ENST00000574029 RALYLQ86SE5 291 aaKnown RBP24.39■■□□□ 1.49
VPS53-216ENST00000574029 LMCD1Q9NZU5 365 aa24.39■■□□□ 1.49
VPS53-216ENST00000574029 SIP14410 1827 aa24.39■■□□□ 1.49
VPS53-216ENST00000574029 XIRP2A4UGR9 3374 aa24.39■■□□□ 1.49
VPS53-216ENST00000574029 H3BRB1 525 aa24.38■■□□□ 1.49
VPS53-216ENST00000574029 STAM2O75886 525 aa24.38■■□□□ 1.49
VPS53-216ENST00000574029 ICAM3P32942 547 aa24.38■■□□□ 1.49
VPS53-216ENST00000574029 ERVK-21P61565 698 aa24.38■■□□□ 1.49
VPS53-216ENST00000574029 MRPS9P82933 396 aaKnown RBP24.38■■□□□ 1.49
VPS53-216ENST00000574029 MKRN4PQ13434 485 aaPredicted RBP24.38■■□□□ 1.49
VPS53-216ENST00000574029 SART3Q15020 963 aaKnown RBP24.38■■□□□ 1.49
VPS53-216ENST00000574029 HLA-CQ95604 372 aa24.38■■□□□ 1.49
VPS53-216ENST00000574029 TUT1Q9H6E5 874 aaKnown RBP24.38■■□□□ 1.49
VPS53-216ENST00000574029 BCAS3Q9H6U6 928 aa24.38■■□□□ 1.49
VPS53-216ENST00000574029 MICAL3Q7RTP6 2002 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 C17orf102A2RUQ5 167 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 LINC01553A4QN01 128 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 RSPH10B2B2RC85 870 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 RBAK-RBAKDNI3L0D1 243 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 RSPH10BP0C881 870 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 THPOP40225 353 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 GNPTABQ3T906 1256 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms