RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 VIRMAQ69YN4 1812 aaKnown RBP7.52□□□□□ -1.21
VPS53-212ENST00000572259 LY75O60449 1722 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 SCN11AQ9UI33 1791 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 FAM86C2PA6NEL3 165 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 MSTNO14793 375 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 TNFRSF10CO14798 259 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 KLF4O43474 513 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 KRT18P05783 430 aaKnown RBP7.51□□□□□ -1.21
VPS53-212ENST00000572259 HLTFQ14527 1009 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS53-212ENST00000572259 BRD3Q15059 726 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 WDR43Q15061 677 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS53-212ENST00000572259 LETMD1Q6P1Q0 360 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 SEZ6L2Q6UXD5 910 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 KRT26Q7Z3Y9 468 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 WDR75Q8IWA0 830 aaKnown RBP7.51□□□□□ -1.21
VPS53-212ENST00000572259 TAB3Q8N5C8 712 aaPredicted RBP7.51□□□□□ -1.21
VPS53-212ENST00000572259 TOP6BLQ8N6T0 577 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 FAM169BQ8N8A8 192 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 C19orf47Q8N9M1 422 aaKnown RBP7.51□□□□□ -1.21
VPS53-212ENST00000572259 MPHOSPH6Q99547 160 aaKnown RBP7.51□□□□□ -1.21
VPS53-212ENST00000572259 SLC52A2Q9HAB3 445 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 C1GALT1Q9NS00 363 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 ATG3Q9NT62 314 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 ASAP1Q9ULH1 1129 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 MAPK8IP3Q9UPT6 1336 aa7.51□□□□□ -1.21
VPS53-212ENST00000572259 COL3A1P02461 1466 aaPredicted RBP7.5□□□□□ -1.21
VPS53-212ENST00000572259 RGS13O14921 159 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 ANP32CO43423 234 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 HTATSF1O43719 755 aaKnown RBP7.5□□□□□ -1.21
VPS53-212ENST00000572259 ITGB2P05107 769 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 CCNFP41002 786 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 CASP7P55210 303 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 GPAT2Q6NUI2 795 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 UNC5AQ6ZN44 842 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 C16orf86Q6ZW13 317 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 TTC6Q86TZ1 520 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 TTC5Q8N0Z6 440 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 FBXL6Q8N531 539 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 BAHD1Q8TBE0 780 aaPredicted RBP7.5□□□□□ -1.21
VPS53-212ENST00000572259 HNRNPLLQ8WVV9 542 aaKnown RBP7.5□□□□□ -1.21
VPS53-212ENST00000572259 SLC39A13Q96H72 371 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 PSMG3-AS1Q96PY0 264 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 SLC9A7Q96T83 725 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 MTFR1LQ9H019 292 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 PRKRIP1Q9H875 184 aaPredicted RBP7.5□□□□□ -1.21
VPS53-212ENST00000572259 TMEM260Q9NX78 707 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 CEP131Q9UPN4 1083 aa7.5□□□□□ -1.21
VPS53-212ENST00000572259 MAP3K5Q99683 1374 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 A0A1W2PQH9 124 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 ESYT3A0FGR9 886 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 FAM221BA6H8Z2 402 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 FAM87AP0C7U9 286 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 CD53P19397 219 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 POLD1P28340 1107 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 POLR2BP30876 1174 aaKnown RBP7.49□□□□□ -1.21
VPS53-212ENST00000572259 ETV3P41162 512 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 EPHB1P54762 984 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 PPP2R5AQ15172 486 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 LARP1BQ659C4 914 aaKnown RBP7.49□□□□□ -1.21
VPS53-212ENST00000572259 CDH24Q86UP0 819 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 PPM1EQ8WY54 764 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 TSR2Q969E8 191 aaKnown RBP7.49□□□□□ -1.21
VPS53-212ENST00000572259 ZNF512BQ96KM6 892 aaPredicted RBP7.49□□□□□ -1.21
VPS53-212ENST00000572259 DHRS1Q96LJ7 313 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 MFSD14AQ96MC6 490 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 DUSP23Q9BVJ7 150 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 TEX13AQ9BXU3 409 aaPredicted RBP7.49□□□□□ -1.21
VPS53-212ENST00000572259 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS53-212ENST00000572259 ZNF700Q9H0M5 742 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 TPX2Q9ULW0 747 aaKnown RBP7.49□□□□□ -1.21
VPS53-212ENST00000572259 TAF1LQ8IZX4 1826 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 TOGARAM1Q9Y4F4 1720 aa7.49□□□□□ -1.21
VPS53-212ENST00000572259 CCER2I3L3R5 266 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 GSC2O15499 205 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 KDM6AO15550 1401 aaPredicted RBP7.48□□□□□ -1.21
VPS53-212ENST00000572259 TSPAN6O43657 245 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 CLEC3AO75596 197 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 SLITRK5O94991 958 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 ZBTB7AO95365 584 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 MYL1P05976 194 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 H2AFB1P0C5Y9 115 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 H2AFB2P0C5Z0 115 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 ACRP10323 421 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 CYP7A1P22680 504 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 CYP27A1Q02318 531 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 FXNQ16595 210 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 NFE2Q16621 373 aaPredicted RBP7.48□□□□□ -1.21
VPS53-212ENST00000572259 ZNF827Q17R98 1081 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 QSER1Q2KHR3 1735 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 CYP27C1Q4G0S4 372 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 BRDTQ58F21 947 aaPredicted RBP7.48□□□□□ -1.21
VPS53-212ENST00000572259 DUSP27Q5VZP5 1158 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 RNF43Q68DV7 783 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 OGFOD3Q6PK18 319 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 ZAR1Q86SH2 424 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 PHACTR3Q96KR7 559 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 TNKS2Q9H2K2 1166 aa7.48□□□□□ -1.21
VPS53-212ENST00000572259 BTBD11A6QL63 1104 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 LEFTY1O75610 366 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 STARD3NLO95772 234 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms