RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 RMDN3Q96TC7 470 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 UPF3BQ9BZI7 483 aaKnown RBP16.19■□□□□ 0.18
LDLR-213ENST00000560502 FTOQ9C0B1 505 aaKnown RBP eCLIP16.19■□□□□ 0.18
LDLR-213ENST00000560502 KAT14Q9H8E8 782 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 CERS4Q9HA82 394 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 NOD1Q9Y239 953 aa16.19■□□□□ 0.18
LDLR-213ENST00000560502 OPLAHO14841 1288 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 CXCL10P02778 98 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 COL9A1P20849 921 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 RPS6KB1P23443 525 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 STXBP2Q15833 593 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 INTS4Q96HW7 963 aaKnown RBP16.18■□□□□ 0.18
LDLR-213ENST00000560502 ZSCAN31Q96LW9 406 aaPredicted RBP16.18■□□□□ 0.18
LDLR-213ENST00000560502 NEK1Q96PY6 1258 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 JMJD4Q9H9V9 463 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 SH2B1Q9NRF2 756 aaPredicted RBP16.18■□□□□ 0.18
LDLR-213ENST00000560502 PDRG1Q9NUG6 133 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 ZSWIM5Q9P217 1185 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 GTF2IRD1Q9UHL9 959 aa16.18■□□□□ 0.18
LDLR-213ENST00000560502 DDX41Q9UJV9 622 aaKnown RBP16.18■□□□□ 0.18
LDLR-213ENST00000560502 SIP14410 1827 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 GTPBP6O43824 516 aaPredicted RBP16.17■□□□□ 0.18
LDLR-213ENST00000560502 F2P00734 622 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 PARP1P09874 1014 aaKnown RBP16.17■□□□□ 0.18
LDLR-213ENST00000560502 HOXD8P13378 290 aaPredicted RBP16.17■□□□□ 0.18
LDLR-213ENST00000560502 SELPP16109 830 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 HSD17B4P51659 736 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 WDR5P61964 334 aaKnown RBP16.17■□□□□ 0.18
LDLR-213ENST00000560502 CUL4AQ13619 759 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 ADCK5Q3MIX3 580 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 KRT40Q6A162 431 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 LRRC8DQ7L1W4 858 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 SPRED2Q7Z698 418 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 FBXO11Q86XK2 927 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 NECAB3Q96P71 396 aaPredicted RBP16.17■□□□□ 0.18
LDLR-213ENST00000560502 PXMP2Q9NR77 195 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 LIMCH1Q9UPQ0 1083 aa16.17■□□□□ 0.18
LDLR-213ENST00000560502 MRPL11Q9Y3B7 192 aaKnown RBP16.17■□□□□ 0.18
LDLR-213ENST00000560502 MICAL3Q7RTP6 2002 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 HAS3O00219 553 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 LPXNO60711 386 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 EIF3JO75822 258 aaKnown RBP16.16■□□□□ 0.18
LDLR-213ENST00000560502 NR3C2P08235 984 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 EIF2AK2P19525 551 aaKnown RBP16.16■□□□□ 0.18
LDLR-213ENST00000560502 KCNQ1P51787 676 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 CHMP4BP1P59074 171 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 DGKDQ16760 1214 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 AAK1Q2M2I8 961 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 TCTN1Q2MV58 587 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 TRAF7Q6Q0C0 670 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 CHST3Q7LGC8 479 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 FBXL16Q8N461 479 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 ARNTL2Q8WYA1 636 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 MTMR8Q96EF0 704 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 TMX3Q96JJ7 454 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 HDAC6Q9UBN7 1215 aa16.16■□□□□ 0.18
LDLR-213ENST00000560502 LCHNA4D1U4 455 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 KIF28PB7ZC32 967 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 PPP1R11O60927 126 aaPredicted RBP16.15■□□□□ 0.18
LDLR-213ENST00000560502 NBNO60934 754 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 RGS20O76081 388 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 PARNO95453 639 aaKnown RBP16.15■□□□□ 0.18
LDLR-213ENST00000560502 CKBP12277 381 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 KCNJ6P48051 423 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 PSEN2P49810 448 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 DEFB103AP81534 67 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 GRB10Q13322 594 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 TRIM71Q2Q1W2 868 aaKnown RBP16.15■□□□□ 0.18
LDLR-213ENST00000560502 ARHGEF16Q5VV41 709 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 CNKSR3Q6P9H4 555 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 STAG2Q8N3U4 1231 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 PPTC7Q8NI37 304 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 KRT23Q9C075 422 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 CHMP5Q9NZZ3 219 aa16.15■□□□□ 0.18
LDLR-213ENST00000560502 BAZ2BQ9UIF8 2168 aaKnown RBP16.15■□□□□ 0.18
LDLR-213ENST00000560502 E7EWF7 191 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 TLL1O43897 1013 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 DHX16O60231 1041 aaKnown RBP16.14■□□□□ 0.17
LDLR-213ENST00000560502 CFBP00751 764 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 ZNF286BP0CG31 522 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 DDIT3P35638 169 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 AK2P54819 239 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 PTK7Q13308 1070 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 LAMC2Q13753 1193 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 MFSD10Q14728 455 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 SEC23AQ15436 765 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 SKIV2LQ15477 1246 aaKnown RBP16.14■□□□□ 0.17
LDLR-213ENST00000560502 DHX32Q7L7V1 743 aaKnown RBP16.14■□□□□ 0.17
LDLR-213ENST00000560502 TMCO2Q7Z6W1 182 aaPredicted RBP16.14■□□□□ 0.17
LDLR-213ENST00000560502 WNT8BQ93098 351 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 PDCD2LQ9BRP1 358 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 KATNAL1Q9BW62 490 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 AMNQ9BXJ7 453 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 CNNM2Q9H8M5 875 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 VAT1LQ9HCJ6 419 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 COG5Q9UP83 839 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 MRVI1Q9Y6F6 885 aa16.14■□□□□ 0.17
LDLR-213ENST00000560502 XIRP2A4UGR9 3374 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 TRDNQ13061 729 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 MBTPS1Q14703 1052 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms