RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 A0A087X0T9 212 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 GMNCA6NCL1 334 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 EIF4E1BA6NMX2 242 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 G3V3G9 751 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 USO1O60763 962 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 RTN2O75298 545 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 NOL4O94818 638 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 FAM228BP0C875 321 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 CYP19A1P11511 503 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 ITGA4P13612 1032 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 LONP1P36776 959 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 UBA7P41226 1012 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 PAFAH1B1P43034 410 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 ASIC1P78348 528 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 CDK17Q00537 523 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 HLTFQ14527 1009 aaKnown RBP eCLIP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 KCNB1Q14721 858 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 DCAF8Q5TAQ9 597 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 RCSD1Q6JBY9 416 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 DYMQ7RTS9 669 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 HEATR3Q7Z4Q2 680 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 RPAINQ86UA6 219 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 MMTAG2Q9BU76 263 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 MROH5Q6ZUA9 1318 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 PNPLA7Q6ZV29 1317 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 COL18A1P39060 1754 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 LOC102724428A0A0B4J2F2 783 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC194A0A1B0GVG4 234 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 A0A1W2PQJ5 194 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 M0R2N6 131 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 CYTH3O43739 400 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 NEBLO76041 1014 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 BMP15O95972 392 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 CCNHP51946 323 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 SIK1P57059 783 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 PAK2Q13177 524 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 PFKFB3Q16875 520 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 CFAP221Q4G0U5 840 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 VWA3BQ502W6 1294 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 TDRD12Q587J7 1177 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 DTHD1Q6ZMT9 781 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC121Q6ZUS5 278 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 CD302Q8IX05 232 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 BLIDQ8IZY5 108 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 GJA10Q969M2 543 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 STAMBPL1Q96FJ0 436 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 CELF4Q9BZC1 486 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 TSGA10Q9BZW7 698 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 DDX47Q9H0S4 455 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 VEZTQ9HBM0 779 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 SAP30BPQ9UHR5 308 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 PCDHA6Q9UN73 950 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 NOVA2Q9UNW9 492 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 NR2E1Q9Y466 385 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 PCDHA8Q9Y5H6 950 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 COL1A1P02452 1464 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 MYH7BA7E2Y1 1941 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 DOCK2Q92608 1830 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 GRID2IPA4D2P6 1211 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 EME2A4GXA9 379 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 PJA2O43164 708 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 MYBP10242 640 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 NF2P35240 595 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 RDXP35241 583 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 COPB2P35606 906 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 HSPA9P38646 679 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 INHBEP58166 350 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 MAGOHP61326 146 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 SETQ01105 290 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 SNCBQ16143 134 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 MREGQ8N565 214 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 RETREG2Q8NC44 543 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 CCT6BQ92526 530 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 MAGOHBQ96A72 148 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 THOC1Q96FV9 657 aaKnown RBP5.34□□□□□ -1.55
LIMA1-214ENST00000552783 SGSM3Q96HU1 749 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 ALS2CR12Q96Q35 445 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 NUDT12Q9BQG2 462 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 NUP58Q9BVL2 599 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 ZHX3Q9H4I2 956 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 ADAMTS1Q9UHI8 967 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 FBXL5Q9UKA1 691 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 UBR2Q8IWV8 1755 aa5.34□□□□□ -1.55
LIMA1-214ENST00000552783 MYH1P12882 1939 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 RTL9Q8NET4 1388 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 GOLGA6L7A0A1B0GV03 622 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 DAPK3O43293 454 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 KCNQ2O43526 872 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 KIF1CO43896 1103 aaKnown RBP5.34□□□□□ -1.56
LIMA1-214ENST00000552783 GOLGA8HP0CJ92 632 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 GNAT2P19087 354 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 TECP42680 631 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 FAM98CQ17RN3 349 aaKnown RBP5.34□□□□□ -1.56
LIMA1-214ENST00000552783 FIGNQ5HY92 759 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 ARL6IP4Q66PJ3 421 aaKnown RBP5.34□□□□□ -1.56
LIMA1-214ENST00000552783 KCNK18Q7Z418 384 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF444Q8N0Y2 327 aaPredicted RBP5.34□□□□□ -1.56
LIMA1-214ENST00000552783 USP38Q8NB14 1042 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 TBC1D5Q92609 795 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 DHTKD1Q96HY7 919 aaPredicted RBP5.34□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms