RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ZSCAN16Q9H4T2 348 aaPredicted RBP24.07■■□□□ 1.44
VPS29-206ENST00000549578 HMX1Q9NP08 348 aaPredicted RBP24.07■■□□□ 1.44
VPS29-206ENST00000549578 DDX25Q9UHL0 483 aaKnown RBP24.07■■□□□ 1.44
VPS29-206ENST00000549578 FIBPO43427 364 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 GCFC2P16383 781 aaKnown RBP24.06■■□□□ 1.44
VPS29-206ENST00000549578 TRAPPC10P48553 1259 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 TTC38Q5R3I4 469 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 PPP4R3AQ6IN85 833 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 NIPA1Q7RTP0 329 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 LENG1Q96BZ8 264 aaPredicted RBP24.06■■□□□ 1.44
VPS29-206ENST00000549578 ARMC5Q96C12 935 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 MBOAT7Q96N66 472 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 UNC93B1Q9H1C4 597 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 KCNH7Q9NS40 1196 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 PKD2L1Q9P0L9 805 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 FAM184BQ9ULE4 1060 aa24.06■■□□□ 1.44
VPS29-206ENST00000549578 SPATA31C2B4DYI2 1134 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 SEPT4O43236 478 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 TXNP10599 105 aaKnown RBP24.05■■□□□ 1.44
VPS29-206ENST00000549578 AKR1A1P14550 325 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 SMPD1P17405 629 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 ICAM3P32942 547 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 TTLL4Q14679 1199 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 LY6KQ17RY6 165 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 RILPL1Q5EBL4 403 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 GJC2Q5T442 439 aaPredicted RBP24.05■■□□□ 1.44
VPS29-206ENST00000549578 COL13A1Q5TAT6 717 aaPredicted RBP24.05■■□□□ 1.44
VPS29-206ENST00000549578 ANO1Q5XXA6 986 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 IQSEC1Q6DN90 963 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 CCDC62Q6P9F0 684 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 ZNF333Q96JL9 665 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 NAP1L4Q99733 375 aaKnown RBP24.05■■□□□ 1.44
VPS29-206ENST00000549578 PCDHB6Q9Y5E3 794 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 MCM7P33993 719 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 SETQ01105 290 aaPredicted RBP24.05■■□□□ 1.44
VPS29-206ENST00000549578 SP2Q02086 613 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 TNFAIP2Q03169 654 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 ZNF174Q15697 407 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 Q4G0T1 1027 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 POTEDQ86YR6 584 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 CDHR1Q96JP9 859 aa24.05■■□□□ 1.44
VPS29-206ENST00000549578 DDX41Q9UJV9 622 aaKnown RBP24.05■■□□□ 1.44
VPS29-206ENST00000549578 ATP9AO75110 1047 aa24.04■■□□□ 1.44
VPS29-206ENST00000549578 CCL5P13501 91 aa24.04■■□□□ 1.44
VPS29-206ENST00000549578 UBA1P22314 1058 aaKnown RBP24.04■■□□□ 1.44
VPS29-206ENST00000549578 FOXD4L6Q3SYB3 417 aaPredicted RBP24.04■■□□□ 1.44
VPS29-206ENST00000549578 FOXD4L3Q6VB84 417 aaPredicted RBP24.04■■□□□ 1.44
VPS29-206ENST00000549578 COPS5Q92905 334 aa24.04■■□□□ 1.44
VPS29-206ENST00000549578 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.04■■□□□ 1.44
VPS29-206ENST00000549578 AGO4Q9HCK5 861 aaKnown RBP24.04■■□□□ 1.44
VPS29-206ENST00000549578 SORBS3O60504 671 aa24.03■■□□□ 1.44
VPS29-206ENST00000549578 TGFB3P10600 412 aa24.03■■□□□ 1.44
VPS29-206ENST00000549578 NUCB2P80303 420 aa24.03■■□□□ 1.44
VPS29-206ENST00000549578 DUSP28Q4G0W2 176 aa24.03■■□□□ 1.44
VPS29-206ENST00000549578 KCNV1Q6PIU1 500 aa24.03■■□□□ 1.44
VPS29-206ENST00000549578 BCAS3Q9H6U6 928 aa24.03■■□□□ 1.44
VPS29-206ENST00000549578 BRCA2P51587 3418 aa24.03■■□□□ 1.44
VPS29-206ENST00000549578 MSH4O15457 936 aa24.02■■□□□ 1.44
VPS29-206ENST00000549578 MAFGO15525 162 aa24.02■■□□□ 1.44
VPS29-206ENST00000549578 NEMFO60524 1076 aa24.02■■□□□ 1.44
VPS29-206ENST00000549578 KCNA2P16389 499 aa24.02■■□□□ 1.44
VPS29-206ENST00000549578 GJA10Q969M2 543 aa24.02■■□□□ 1.44
VPS29-206ENST00000549578 ZNF577Q9BSK1 485 aa24.02■■□□□ 1.44
VPS29-206ENST00000549578 RNF208Q9H0X6 261 aa24.02■■□□□ 1.44
VPS29-206ENST00000549578 DDX20Q9UHI6 824 aaKnown RBP24.02■■□□□ 1.44
VPS29-206ENST00000549578 ITGB3BPQ13352 177 aaPredicted RBP24.01■■□□□ 1.43
VPS29-206ENST00000549578 ETNPPLQ8TBG4 499 aa24.01■■□□□ 1.43
VPS29-206ENST00000549578 FTOQ9C0B1 505 aaKnown RBP eCLIP24.01■■□□□ 1.43
VPS29-206ENST00000549578 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.01■■□□□ 1.43
VPS29-206ENST00000549578 CIZ1Q9ULV3 898 aaPredicted RBP24.01■■□□□ 1.43
VPS29-206ENST00000549578 GNEQ9Y223 722 aaKnown RBP24.01■■□□□ 1.43
VPS29-206ENST00000549578 MYH15Q9Y2K3 1946 aa24.01■■□□□ 1.43
VPS29-206ENST00000549578 DOCK5Q9H7D0 1870 aa24.01■■□□□ 1.43
VPS29-206ENST00000549578 IPO5O00410 1097 aaKnown RBP24■■□□□ 1.43
VPS29-206ENST00000549578 GGPS1O95749 300 aa24■■□□□ 1.43
VPS29-206ENST00000549578 TMEM60Q9H2L4 133 aa24■■□□□ 1.43
VPS29-206ENST00000549578 PAK6Q9NQU5 681 aaPredicted RBP24■■□□□ 1.43
VPS29-206ENST00000549578 RARBP10826 455 aa24■■□□□ 1.43
VPS29-206ENST00000549578 CALCRLQ16602 461 aa24■■□□□ 1.43
VPS29-206ENST00000549578 SENP7Q9BQF6 1050 aa24■■□□□ 1.43
VPS29-206ENST00000549578 KCNMB3Q9NPA1 279 aa24■■□□□ 1.43
VPS29-206ENST00000549578 NKRFO15226 690 aaKnown RBP eCLIP23.99■■□□□ 1.43
VPS29-206ENST00000549578 DYNC1LI2O43237 492 aaPredicted RBP23.99■■□□□ 1.43
VPS29-206ENST00000549578 DUSP11O75319 330 aaKnown RBP23.99■■□□□ 1.43
VPS29-206ENST00000549578 ARHGAP1Q07960 439 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 ORC2Q13416 577 aaPredicted RBP23.99■■□□□ 1.43
VPS29-206ENST00000549578 NEDD9Q14511 834 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 LHX8Q68G74 356 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 CYFIP1Q7L576 1253 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 TLK2Q86UE8 772 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 HAS1Q92839 578 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 SLC5A5Q92911 643 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 DEFB118Q96PH6 123 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 CLIC4Q9Y696 253 aa23.99■■□□□ 1.43
VPS29-206ENST00000549578 POTEFA5A3E0 1075 aa23.98■■□□□ 1.43
VPS29-206ENST00000549578 DDX39AO00148 427 aaKnown RBP23.98■■□□□ 1.43
VPS29-206ENST00000549578 MSCO60682 206 aa23.98■■□□□ 1.43
VPS29-206ENST00000549578 GH1P01241 217 aa23.98■■□□□ 1.43
VPS29-206ENST00000549578 IRX5P78411 483 aaPredicted RBP23.98■■□□□ 1.43
VPS29-206ENST00000549578 CEBPZQ03701 1054 aaKnown RBP23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms