RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CALCRL	Q16602	461 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	LY6K	Q17RY6	165 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545		Q4G0T1	1027 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	ANO1	Q5XXA6	986 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	PPP4R3A	Q6IN85	833 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	TAPT1	Q6NXT6	567 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	MOXD1	Q6UVY6	613 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	NIPA1	Q7RTP0	329 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	TRPV1	Q8NER1	839 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	SDF4	Q9BRK5	362 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	MCOLN1	Q9GZU1	580 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	MLXIP	Q9HAP2	919 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	KCNH7	Q9NS40	1196 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	TFIP11	Q9UBB9	837 aa	Known RBP	11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	TCEAL9	Q9UHQ7	104 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	PCDHB6	Q9Y5E3	794 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	SMCHD1	A6NHR9	2005 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	WNT7A	O00755	349 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	SEPT4	O43236	478 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	DYNC1LI2	O43237	492 aa	Predicted RBP	11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	SLC37A4	O43826	429 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	IGHA2	P01877	340 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	MYCN	P04198	464 aa	Predicted RBP	11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	TGFB3	P10600	412 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	AKR1A1	P14550	325 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	SMPD1	P17405	629 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	ICAM3	P32942	547 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	NEDD9	Q14511	834 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	DHX37	Q8IY37	1157 aa	Known RBP	11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	KATNBL1	Q9H079	304 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	AP5M1	Q9H0R1	490 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	RNF208	Q9H0X6	261 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	AGO4	Q9HCK5	861 aa	Known RBP	11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	DDX41	Q9UJV9	622 aa	Known RBP	11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	CEP131	Q9UPN4	1083 aa		11.5	□□□□□ -0.57
CPSF7-221	ENST00000543545	IGLV3-22	A0A075B6J6	115 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	RBM47	A0AV96	593 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	DDX39A	O00148	427 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	IPO5	O00410	1097 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	MSH4	O15457	936 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	ATP9A	O75110	1047 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	ARIH2	O95376	493 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	GGPS1	O95749	300 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	BMP15	O95972	392 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	GH1	P01241	217 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	RARB	P10826	455 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	TXK	P42681	527 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	SP4	Q02446	784 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	DNM1	Q05193	864 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	PTGDR	Q13258	359 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	SEMA3F	Q13275	785 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	ORC2	Q13416	577 aa	Predicted RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	SF3A1	Q15459	793 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	DUSP28	Q4G0W2	176 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	MAP3K21	Q5TCX8	1036 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	CYFIP1	Q7L576	1253 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	SLFN12	Q8IYM2	578 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	GIMAP8	Q8ND71	665 aa	Predicted RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	OR6J1	Q8NGC5	347 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	COPS5	Q92905	334 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	GJA10	Q969M2	543 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	MBOAT7	Q96N66	472 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	USP28	Q96RU2	1077 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	TEKT3	Q9BXF9	490 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	UNC93B1	Q9H1C4	597 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	TMEM60	Q9H2L4	133 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	SPC25	Q9HBM1	224 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	CFAP45	Q9UL16	551 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	CLIC4	Q9Y696	253 aa		11.49	□□□□□ -0.57
CPSF7-221	ENST00000543545	NOP56	O00567	594 aa	Known RBP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	NKRF	O15226	690 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	MSC	O60682	206 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	GAS7	O60861	476 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	OR52Z1	P0C646	297 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	CCL5	P13501	91 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	UBA1	P22314	1058 aa	Known RBP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	SP2	Q02086	613 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	LAMC2	Q13753	1193 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	STK38	Q15208	465 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	MTFR1	Q15390	333 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	BRDT	Q58F21	947 aa	Predicted RBP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	CELF3	Q5SZQ8	465 aa	Known RBP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	TMEM63B	Q5T3F8	832 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	GJC2	Q5T442	439 aa	Predicted RBP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	LRCH2	Q5VUJ6	765 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	CCDC62	Q6P9F0	684 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	LENG9	Q96B70	501 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	LENG1	Q96BZ8	264 aa	Predicted RBP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	FAM20A	Q96MK3	541 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	SPATA33	Q96N06	139 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	SENP7	Q9BQF6	1050 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	FTO	Q9C0B1	505 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	11.48	□□□□□ -0.57	7e-8	■■■■□ 20.4
CPSF7-221	ENST00000543545	TBC1D22B	Q9NU19	505 aa		11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	DDX20	Q9UHI6	824 aa	Known RBP	11.48	□□□□□ -0.57
CPSF7-221	ENST00000543545	LAD1	O00515	517 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	TBX3	O15119	743 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	CHMP2A	O43633	222 aa		11.47	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms