RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 MFSD10Q14728 455 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 RNF20Q5VTR2 975 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 GDF6Q6KF10 455 aaPredicted RBP18.05■□□□□ 0.48
VPS33A-206ENST00000542310 NFXL1Q6ZNB6 911 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 SGMS1Q86VZ5 419 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 FCHSD1Q86WN1 690 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 INPP4AQ96PE3 977 aaPredicted RBP18.05■□□□□ 0.48
VPS33A-206ENST00000542310 CTAGE1Q96RT6 745 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 SLC9A7Q96T83 725 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 MYL10Q9BUA6 226 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 CHD9Q3L8U1 2897 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 PTPRSQ13332 1948 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 PPFIA4O75335 1185 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 BAIAP3O94812 1187 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 GGPS1O95749 300 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 ZNF286BP0CG31 522 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 XRRA1Q6P2D8 792 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 C7orf31Q8N865 590 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 CUL5Q93034 780 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 SPATA33Q96N06 139 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 PCDHA11Q9Y5I1 949 aa18.04■□□□□ 0.48
VPS33A-206ENST00000542310 ZBBXA8MT70 800 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 PLEKHA8P1O95397 391 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 ATP2A2P16615 1042 aaKnown RBP18.03■□□□□ 0.48
VPS33A-206ENST00000542310 KIAA0753Q2KHM9 967 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 HSDL1Q3SXM5 330 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 DEFB128Q7Z7B8 93 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 PHOSPHO2Q8TCD6 241 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 PPP1R13LQ8WUF5 828 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 GAS2L1Q99501 681 aaPredicted RBP18.03■□□□□ 0.48
VPS33A-206ENST00000542310 CHD7Q9P2D1 2997 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 HDAC6Q9UBN7 1215 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 SLC12A7Q9Y666 1083 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 CUL9Q8IWT3 2517 aa18.03■□□□□ 0.48
VPS33A-206ENST00000542310 FIBPO43427 364 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 SELPP16109 830 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 CHMP4BP1P59074 171 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 MRPS9P82933 396 aaKnown RBP18.02■□□□□ 0.48
VPS33A-206ENST00000542310 PTK7Q13308 1070 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 NEDD9Q14511 834 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 PCNX4Q63HM2 1172 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 LRRC8DQ7L1W4 858 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 SRBD1Q8N5C6 995 aaKnown RBP18.02■□□□□ 0.48
VPS33A-206ENST00000542310 SMARCC2Q8TAQ2 1214 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 DHX38Q92620 1227 aaKnown RBP18.02■□□□□ 0.48
VPS33A-206ENST00000542310 NKX2-4Q9H2Z4 354 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 SLC28A3Q9HAS3 691 aa18.02■□□□□ 0.48
VPS33A-206ENST00000542310 YBX2Q9Y2T7 364 aaKnown RBP18.02■□□□□ 0.48
VPS33A-206ENST00000542310 MEIS2O14770 477 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 SP2Q02086 613 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 METTL7BQ6UX53 244 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 TMTC3Q6ZXV5 915 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 TEX2Q8IWB9 1127 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 PIBF1Q8WXW3 757 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 C16orf70Q9BSU1 422 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 ALG1Q9BT22 464 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 MLXIPQ9HAP2 919 aa18.01■□□□□ 0.47
VPS33A-206ENST00000542310 MICAL3Q7RTP6 2002 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 SPATA31C2B4DYI2 1134 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 CDC45O75419 566 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 CXCL10P02778 98 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 CKBP12277 381 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 HOXC8P31273 242 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 TSGA10IPQ3SY00 556 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 PPP2R2DQ66LE6 453 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 GPKOWQ92917 476 aaPredicted RBP eCLIP18■□□□□ 0.47
VPS33A-206ENST00000542310 SENP7Q9BQF6 1050 aa18■□□□□ 0.47
VPS33A-206ENST00000542310 FTOQ9C0B1 505 aaKnown RBP eCLIP18■□□□□ 0.47
VPS33A-206ENST00000542310 RBM28Q9NW13 759 aaKnown RBP18■□□□□ 0.47
VPS33A-206ENST00000542310 KAT6AQ92794 2004 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 NOP56O00567 594 aaKnown RBP17.99■□□□□ 0.47
VPS33A-206ENST00000542310 LGALS2P05162 132 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 RXRAP19793 462 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 RABGGTBP53611 331 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 SEMA3FQ13275 785 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 COL9A3Q14050 684 aaPredicted RBP17.99■□□□□ 0.47
VPS33A-206ENST00000542310 KRT32Q14532 448 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 TRIM71Q2Q1W2 868 aaKnown RBP17.99■□□□□ 0.47
VPS33A-206ENST00000542310 USP17L6PQ6QN14 398 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 MICU3Q86XE3 530 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 FANCBQ8NB91 859 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 NEK1Q96PY6 1258 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 PRDM12Q9H4Q4 367 aa17.99■□□□□ 0.47
VPS33A-206ENST00000542310 CNTNAP5Q8WYK1 1306 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 VCANP13611 3396 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 RCAN1P53805 252 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 CNKSR3Q6P9H4 555 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 APOA5Q6Q788 366 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 SYNE3Q6ZMZ3 975 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 NLRX1Q86UT6 975 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 GIMAP8Q8ND71 665 aaPredicted RBP17.98■□□□□ 0.47
VPS33A-206ENST00000542310 GPRASP2Q96D09 838 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 CDHR1Q96JP9 859 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 USP26Q9BXU7 913 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 LRRC2Q9BYS8 371 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 PSTPIP2Q9H939 334 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 EMSYQ7Z589 1322 aa17.98■□□□□ 0.47
VPS33A-206ENST00000542310 COL4A4P53420 1690 aaPredicted RBP17.97■□□□□ 0.47
VPS33A-206ENST00000542310 H3BRB1 525 aa17.97■□□□□ 0.47
VPS33A-206ENST00000542310 EFCAB14O75071 495 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms