RNA–Protein interactions for RNA: ENST00000540812.1

TRIM65-203, Transcript of tripartite motif containing 65, human

TSL 2

Gene TRIM65, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM65-203	ENST00000540812	RBL2	Q08999	1139 aa		18.86	■□□□□ 0.61
TRIM65-203	ENST00000540812	HIC1	Q14526	733 aa		18.86	■□□□□ 0.61
TRIM65-203	ENST00000540812	PGM5	Q15124	567 aa		18.86	■□□□□ 0.61
TRIM65-203	ENST00000540812	MYSM1	Q5VVJ2	828 aa		18.86	■□□□□ 0.61
TRIM65-203	ENST00000540812	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	18.86	■□□□□ 0.61
TRIM65-203	ENST00000540812	KATNAL1	Q9BW62	490 aa		18.86	■□□□□ 0.61
TRIM65-203	ENST00000540812	RIOX1	Q9H6W3	641 aa		18.86	■□□□□ 0.61
TRIM65-203	ENST00000540812	SUPT16H	Q9Y5B9	1047 aa	Known RBP	18.86	■□□□□ 0.61
TRIM65-203	ENST00000540812	BDP1	A6H8Y1	2624 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	PTPRS	Q13332	1948 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	IFIT3	O14879	490 aa	Known RBP	18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	CYTH3	O43739	400 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	CXCL10	P02778	98 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	POU3F3	P20264	500 aa	Predicted RBP	18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	CHML	P26374	656 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	DEFB103A	P81534	67 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	SP2	Q02086	613 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	TFF2	Q03403	129 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	TRDN	Q13061	729 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	TRIM71	Q2Q1W2	868 aa	Known RBP	18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	HSDL1	Q3SXM5	330 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	CELF3	Q5SZQ8	465 aa	Known RBP	18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	TRAF7	Q6Q0C0	670 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	VSIG10L	Q86VR7	867 aa		18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	UHRF1	Q96T88	793 aa	Predicted RBP	18.85	■□□□□ 0.61
TRIM65-203	ENST00000540812	LCHN	A4D1U4	455 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	KIF28P	B7ZC32	967 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	TLL1	O43897	1013 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	GGPS1	O95749	300 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	UBA1	P22314	1058 aa	Known RBP	18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	KCNJ6	P48051	423 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	SKIV2L	Q15477	1246 aa	Known RBP	18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	CNKSR3	Q6P9H4	555 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	FCHSD1	Q86WN1	690 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	SPATA33	Q96N06	139 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	MAP3K20	Q9NYL2	800 aa	Known RBP	18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812		U3KPZ7	1027 aa	Predicted RBP	18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812	MYH7B	A7E2Y1	1941 aa		18.84	■□□□□ 0.61
TRIM65-203	ENST00000540812		E7EWF7	191 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	GCOM1	H8Y6P7	765 aa	Predicted RBP	18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	GTPBP6	O43824	516 aa	Predicted RBP	18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	POLR2M	P0CAP2	368 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	CCND2	P30279	289 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	TROAP	Q12815	778 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	PTK7	Q13308	1070 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	MBTPS1	Q14703	1052 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	ZNF618	Q5T7W0	954 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	SAMD3	Q8N6K7	520 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	NECAB3	Q96P71	396 aa	Predicted RBP	18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	TSPYL2	Q9H2G4	693 aa	Predicted RBP	18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	BCAS3	Q9H6U6	928 aa		18.83	■□□□□ 0.6
TRIM65-203	ENST00000540812	PPFIA4	O75335	1185 aa		18.82	■□□□□ 0.6
TRIM65-203	ENST00000540812	ANTXR2	P58335	489 aa		18.82	■□□□□ 0.6
TRIM65-203	ENST00000540812	GRB10	Q13322	594 aa		18.82	■□□□□ 0.6
TRIM65-203	ENST00000540812	WTAP	Q15007	396 aa		18.82	■□□□□ 0.6
TRIM65-203	ENST00000540812	KCNV1	Q6PIU1	500 aa		18.82	■□□□□ 0.6
TRIM65-203	ENST00000540812	PIBF1	Q8WXW3	757 aa		18.82	■□□□□ 0.6
TRIM65-203	ENST00000540812	C16orf70	Q9BSU1	422 aa		18.82	■□□□□ 0.6
TRIM65-203	ENST00000540812	PNMA6F	A0A0J9YX94	578 aa		18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	ERICH2	A1L162	156 aa		18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	LPXN	O60711	386 aa		18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	PARN	O95453	639 aa	Known RBP	18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	BMP1	P13497	986 aa		18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	RALYL	Q86SE5	291 aa	Known RBP	18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	IL27	Q8NEV9	243 aa		18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	NCOA7	Q8NI08	942 aa		18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	RUFY2	Q8WXA3	655 aa		18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	TCF20	Q9UGU0	1960 aa	Known RBP	18.81	■□□□□ 0.6
TRIM65-203	ENST00000540812	ABHD14A-ACY1	A0A1B0GW23	586 aa		18.8	■□□□□ 0.6
TRIM65-203	ENST00000540812	SGSM2	O43147	1006 aa		18.8	■□□□□ 0.6
TRIM65-203	ENST00000540812	TGFB3	P10600	412 aa		18.8	■□□□□ 0.6
TRIM65-203	ENST00000540812	KCNQ1	P51787	676 aa		18.8	■□□□□ 0.6
TRIM65-203	ENST00000540812	MRPS9	P82933	396 aa	Known RBP	18.8	■□□□□ 0.6
TRIM65-203	ENST00000540812	ZBED2	Q9BTP6	218 aa		18.8	■□□□□ 0.6
TRIM65-203	ENST00000540812	MLXIP	Q9HAP2	919 aa		18.8	■□□□□ 0.6
TRIM65-203	ENST00000540812	FRMPD4	Q14CM0	1322 aa		18.79	■□□□□ 0.6
TRIM65-203	ENST00000540812	GJB5	O95377	273 aa		18.79	■□□□□ 0.6
TRIM65-203	ENST00000540812	TRAF1	Q13077	416 aa		18.79	■□□□□ 0.6
TRIM65-203	ENST00000540812	SEMA3F	Q13275	785 aa		18.79	■□□□□ 0.6
TRIM65-203	ENST00000540812	FAM117B	Q6P1L5	589 aa		18.79	■□□□□ 0.6
TRIM65-203	ENST00000540812	CATIP	Q7Z7H3	387 aa		18.79	■□□□□ 0.6
TRIM65-203	ENST00000540812	MB21D2	Q8IYB1	491 aa	Predicted RBP	18.79	■□□□□ 0.6
TRIM65-203	ENST00000540812	IGDCC4	Q8TDY8	1250 aa		18.79	■□□□□ 0.6
TRIM65-203	ENST00000540812	LGR5	O75473	907 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	LGALS2	P05162	132 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	THPO	P40225	353 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	IRX6	P78412	446 aa	Predicted RBP	18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	IKBKE	Q14164	716 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	SART3	Q15020	963 aa	Known RBP	18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	SERINC5	Q86VE9	423 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	GDPD5	Q8WTR4	605 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	RAD9A	Q99638	391 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	MYL10	Q9BUA6	226 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	MTUS1	Q9ULD2	1270 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	TELO2	Q9Y4R8	837 aa		18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	COL4A4	P53420	1690 aa	Predicted RBP	18.78	■□□□□ 0.6
TRIM65-203	ENST00000540812	C17orf102	A2RUQ5	167 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812		H3BRB1	525 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	SMIM10L2A	P0DMW4	78 aa		18.77	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms