RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PURBQ96QR8 312 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 SH2D4AQ9H788 454 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 FBXO2Q9UK22 296 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 JCADQ9P266 1359 aa13.16□□□□□ -0.3
LIMCH1-213ENST00000511496 WDR17Q8IZU2 1322 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 TARBP1Q13395 1621 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 ATP9AO75110 1047 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 FTCDO95954 541 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 PTPREP23469 700 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 TMED1Q13445 227 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 PRPF4BQ13523 1007 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 SMC1BQ8NDV3 1235 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 WDR66Q8TBY9 1149 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 PIGOQ8TEQ8 1089 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 PAGE5Q96GU1 130 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 CLMNQ96JQ2 1002 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 NEUROG2Q9H2A3 272 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 HELLSQ9NRZ9 838 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 CHPF2Q9P2E5 772 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 PREX2Q70Z35 1606 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 TRIM49BA6NDI0 452 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 ALOX15P16050 662 aaPredicted RBP13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 NAT1P18440 290 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 BNIP1Q12981 228 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 PAK1Q13153 545 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 LRRC14Q15048 493 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 PTPROQ16827 1216 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 IRGCQ6NXR0 463 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 FERMT2Q96AC1 680 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 MTA3Q9BTC8 594 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 DDX21Q9NR30 783 aaKnown RBP eCLIP13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 PCDHB6Q9Y5E3 794 aa13.15□□□□□ -0.3
LIMCH1-213ENST00000511496 HSPD1P10809 573 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 ACADSP16219 412 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 CCDC92Q53HC0 331 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 TMC4Q7Z404 712 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 MICU3Q86XE3 530 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 PALB2Q86YC2 1186 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 CCDC82Q8N4S0 544 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 UHMK1Q8TAS1 419 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 PBKQ96KB5 322 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 FAM81BQ96LP2 452 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 KRT23Q9C075 422 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 SALL4Q9UJQ4 1053 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 ZNF711Q9Y462 761 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 A0A087X0B3 334 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 NVLO15381 856 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 PENKP01210 267 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 GSTA2P09210 222 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 MAGEA1P43355 309 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 CC2D2BQ6DHV5 1058 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 IFT43Q96FT9 208 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 CORO1BQ9BR76 489 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 TRIM31Q9BZY9 425 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 FGFR1OP2Q9NVK5 253 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 TUBGCP4Q9UGJ1 667 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 KCNJ14Q9UNX9 436 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 ATP8A1Q9Y2Q0 1164 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 USP15Q9Y4E8 981 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 RFX7Q2KHR2 1363 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 SNX3O60493 162 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 PEX11AO75192 247 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 FAM69CQ0P6D2 419 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 PABPC4Q13310 644 aaKnown RBP eCLIP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 PLS1Q14651 629 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 C2CD5Q86YS7 1000 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 FITM2Q8N6M3 262 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 GBP7Q8N8V2 638 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 TTC8Q8TAM2 541 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 SPATA20Q8TB22 786 aa13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 METTL5Q9NRN9 209 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-213ENST00000511496 KIF1BO60333 1816 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 SUN1O94901 812 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 RAPGEF3O95398 923 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 ZNF662Q6ZS27 426 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 RALYLQ86SE5 291 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 ZBTB8BQ8NAP8 495 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 CYP39A1Q9NYL5 469 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 CTTNBP2NLQ9P2B4 639 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 DBNLQ9UJU6 430 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 ENTPD5O75356 428 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 PIP4K2AP48426 406 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 TNNC1P63316 161 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 EHHADHQ08426 723 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 IDI1Q13907 227 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 DZIP3Q86Y13 1208 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 RBBP8NLQ8NC74 664 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 PTPRN2Q92932 1015 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 SLC35B4Q969S0 331 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 RAB3IPQ96QF0 476 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 ISCUQ9H1K1 167 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 MLXIPLQ9NP71 852 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 BARX2Q9UMQ3 279 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 MYH13Q9UKX3 1938 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 A0A0G2JS52 829 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 METAP2P50579 478 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 TOB1P50616 345 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 KLHDC7AQ5VTJ3 777 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 CTNNBL1Q8WYA6 563 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms