RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 HMGB1P09429 215 aaKnown RBP6.65□□□□□ -1.34
CUX1-208ENST00000485792 ALAS1P13196 640 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 ITGB8P26012 769 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 CST5P28325 142 aaPredicted RBP6.65□□□□□ -1.34
CUX1-208ENST00000485792 RPS6P62753 249 aaKnown RBP6.65□□□□□ -1.34
CUX1-208ENST00000485792 KRT32Q14532 448 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 SNX17Q15036 470 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 NPY5RQ15761 445 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 NTRK3Q16288 839 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 QPCTQ16769 361 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 CSPP1Q1MSJ5 1256 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 LRRC26Q2I0M4 334 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 WDR78Q5VTH9 848 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 PRPF38BQ5VTL8 546 aaKnown RBP6.65□□□□□ -1.34
CUX1-208ENST00000485792 RNF20Q5VTR2 975 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 APOA5Q6Q788 366 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 ARMCX2Q7L311 632 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 RALYLQ86SE5 291 aaKnown RBP6.65□□□□□ -1.34
CUX1-208ENST00000485792 TEX2Q8IWB9 1127 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 CCAR1Q8IX12 1150 aaKnown RBP6.65□□□□□ -1.34
CUX1-208ENST00000485792 DNERQ8NFT8 737 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 COPS5Q92905 334 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 CTAGE1Q96RT6 745 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 PIGSQ96S52 555 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 ABHD16BQ9H3Z7 469 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 CCPG1Q9ULG6 757 aa6.65□□□□□ -1.34
CUX1-208ENST00000485792 GNEQ9Y223 722 aaKnown RBP6.65□□□□□ -1.34
CUX1-208ENST00000485792 GRIN2DO15399 1336 aa6.65□□□□□ -1.35
CUX1-208ENST00000485792 ABCB11O95342 1321 aa6.65□□□□□ -1.35
CUX1-208ENST00000485792 SPTBN5Q9NRC6 3674 aaKnown RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 PNMA6FA0A0J9YX94 578 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 ASB14A6NK59 587 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 PIK3CDO00329 1044 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 LILRB3O75022 631 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 DUSP11O75319 330 aaKnown RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 ADCYAP1R1P41586 468 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 ALDH5A1P51649 535 aaPredicted RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 APOBRQ0VD83 1088 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 ACVR2BQ13705 512 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 BAATQ14032 418 aaPredicted RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 SART3Q15020 963 aaKnown RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 PPP2R5BQ15173 497 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 PKN1Q16512 942 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 USH1GQ495M9 461 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 TMEM67Q5HYA8 995 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 CASC1Q6TDU7 716 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 TMTC3Q6ZXV5 915 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 SCUBE3Q8IX30 993 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 ANKRD35Q8N283 1001 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 FANCBQ8NB91 859 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 SYTL5Q8TDW5 730 aaPredicted RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 DDX11Q96FC9 970 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 PAWRQ96IZ0 340 aaKnown RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 LZTS2Q9BRK4 669 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 AMNQ9BXJ7 453 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 UPF3BQ9BZI7 483 aaKnown RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 BIN2Q9UBW5 565 aaPredicted RBP6.64□□□□□ -1.35
CUX1-208ENST00000485792 Q9Y3F1 56 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 ARID2Q68CP9 1835 aa6.64□□□□□ -1.35
CUX1-208ENST00000485792 ERICH2A1L162 156 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 DNM1LO00429 736 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 MEIS2O14770 477 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 FARP2O94887 1054 aaPredicted RBP6.63□□□□□ -1.35
CUX1-208ENST00000485792 CTDNEP1O95476 244 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 PGK1P00558 417 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 TFRCP02786 760 aaKnown RBP6.63□□□□□ -1.35
CUX1-208ENST00000485792 CALM1P0DP23 149 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 CALM2P0DP24 149 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 CALM3P0DP25 149 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 AKR1A1P14550 325 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 SMPD1P17405 629 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 RPS6KB1P23443 525 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 HOXA13P31271 388 aaPredicted RBP6.63□□□□□ -1.35
CUX1-208ENST00000485792 COL4A4P53420 1690 aaPredicted RBP6.63□□□□□ -1.35
CUX1-208ENST00000485792 GJA9P57773 515 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 ANAPC15P60006 121 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 LRRC41Q15345 812 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 CCDC144BQ3MJ40 725 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 PPP2R2DQ66LE6 453 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 WWC2Q6AWC2 1192 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 IQSEC1Q6DN90 963 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 CCDC62Q6P9F0 684 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 RNF207Q6ZRF8 634 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 EEPD1Q7L9B9 569 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 MICAL3Q7RTP6 2002 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 NECAB2Q7Z6G3 386 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 SH3RF1Q7Z6J0 888 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 CATIPQ7Z7H3 387 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 MICU3Q86XE3 530 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 FBXO11Q86XK2 927 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 PIBF1Q8WXW3 757 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 ZNF516Q92618 1163 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 THAP11Q96EK4 314 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 AIFM3Q96NN9 605 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 TAAR1Q96RJ0 339 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 IWS1Q96ST2 819 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 TSEN34Q9BSV6 310 aaKnown RBP6.63□□□□□ -1.35
CUX1-208ENST00000485792 NCOA5Q9HCD5 579 aaKnown RBP6.63□□□□□ -1.35
CUX1-208ENST00000485792 GJB4Q9NTQ9 266 aa6.63□□□□□ -1.35
CUX1-208ENST00000485792 PHF24Q9UPV7 400 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms