RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CALCRLQ16602 461 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 POTEDQ86YR6 584 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 SLAIN1Q8ND83 568 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 LENG9Q96B70 501 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 CDHR1Q96JP9 859 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 UIMC1Q96RL1 719 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 KATNBL1Q9H079 304 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 PDGFCQ9NRA1 345 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 KCNH7Q9NS40 1196 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 ZHX1Q9UKY1 873 aaPredicted RBP13.87□□□□□ -0.19
SDC1-206ENST00000482879 CFAP45Q9UL16 551 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 CEP131Q9UPN4 1083 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 SPATA31C2B4DYI2 1134 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 MSH4O15457 936 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 MAFGO15525 162 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 FIBPO43427 364 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 BAG4O95429 457 aaKnown RBP13.86□□□□□ -0.19
SDC1-206ENST00000482879 BMP15O95972 392 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 HMGCRP04035 888 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 GRK4P32298 578 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 ICAM3P32942 547 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 KRT85P78386 507 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 TRIM32Q13049 653 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 PTGDRQ13258 359 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 SEMA3FQ13275 785 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 STK38Q15208 465 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 TAPT1Q6NXT6 567 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 KCNV1Q6PIU1 500 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 C4orf32Q8N8J7 132 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 TMEM60Q9H2L4 133 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 POLR3EQ9NVU0 708 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 PKD2L1Q9P0L9 805 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 MRVI1Q9Y6F6 885 aa13.86□□□□□ -0.19
SDC1-206ENST00000482879 RBM47A0AV96 593 aaKnown RBP13.85□□□□□ -0.19
SDC1-206ENST00000482879 ZNF865P0CJ78 1059 aaPredicted RBP13.85□□□□□ -0.19
SDC1-206ENST00000482879 TGFB3P10600 412 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 NASPP49321 788 aaPredicted RBP13.85□□□□□ -0.19
SDC1-206ENST00000482879 CACNB2Q08289 660 aaPredicted RBP13.85□□□□□ -0.19
SDC1-206ENST00000482879 TTLL4Q14679 1199 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 SLC39A14Q15043 492 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 PTPAQ15257 358 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 IQSEC1Q6DN90 963 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 ETNPPLQ8TBG4 499 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 SCFD2Q8WU76 684 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 FAM20AQ96MK3 541 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 ZNF577Q9BSK1 485 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 AGO4Q9HCK5 861 aaKnown RBP13.85□□□□□ -0.19
SDC1-206ENST00000482879 KCNMB3Q9NPA1 279 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 NRBP1Q9UHY1 535 aa13.85□□□□□ -0.19
SDC1-206ENST00000482879 IPO5O00410 1097 aaKnown RBP13.84□□□□□ -0.19
SDC1-206ENST00000482879 LAD1O00515 517 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 TBX3O15119 743 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 ATP9AO75110 1047 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 ARIH2O95376 493 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 YEATS4O95619 227 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 OR52Z1P0C646 297 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 TXNP10599 105 aaKnown RBP13.84□□□□□ -0.19
SDC1-206ENST00000482879 ADCYAP1R1P41586 468 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 TXKP42681 527 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 ATP2C1P98194 919 aaPredicted RBP13.84□□□□□ -0.19
SDC1-206ENST00000482879 SP2Q02086 613 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 LY6KQ17RY6 165 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 CCDC144BQ3MJ40 725 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 SLFN12Q8IYM2 578 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 LINC00301Q8NCQ3 95 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 TRPV1Q8NER1 839 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 HAS1Q92839 578 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 SLC5A5Q92911 643 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 GJA10Q969M2 543 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 MTMR9Q96QG7 549 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 PRDM10Q9NQV6 1147 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 DDX41Q9UJV9 622 aaKnown RBP13.84□□□□□ -0.19
SDC1-206ENST00000482879 RCOR1Q9UKL0 485 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 FAM184BQ9ULE4 1060 aa13.84□□□□□ -0.19
SDC1-206ENST00000482879 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.83□□□□□ -0.2
SDC1-206ENST00000482879 SPTLC2O15270 562 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 INHAP05111 366 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 CYBAP13498 195 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 PRKAR2AP13861 404 aaKnown RBP13.83□□□□□ -0.2
SDC1-206ENST00000482879 KCNA2P16389 499 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 MARCKSP29966 332 aaPredicted RBP13.83□□□□□ -0.2
SDC1-206ENST00000482879 CNGA1P29973 690 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 TNFAIP2Q03169 654 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 NEDD9Q14511 834 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 PKN2Q16513 984 aaKnown RBP13.83□□□□□ -0.2
SDC1-206ENST00000482879 LRCH2Q5VUJ6 765 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 CCDC62Q6P9F0 684 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 FBXO46Q6PJ61 603 aaPredicted RBP13.83□□□□□ -0.2
SDC1-206ENST00000482879 SH3TC2Q8TF17 1288 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 LEO1Q8WVC0 666 aaPredicted RBP13.83□□□□□ -0.2
SDC1-206ENST00000482879 SPATA32Q96LK8 384 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 SENP7Q9BQF6 1050 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 SDF4Q9BRK5 362 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 SCAND2PQ9GZW5 306 aaPredicted RBP13.83□□□□□ -0.2
SDC1-206ENST00000482879 TBC1D22BQ9NU19 505 aa13.83□□□□□ -0.2
SDC1-206ENST00000482879 WDR81Q562E7 1941 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 DDX39AO00148 427 aaKnown RBP13.82□□□□□ -0.2
SDC1-206ENST00000482879 SORBS3O60504 671 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 GAS7O60861 476 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 SMPD1P17405 629 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms