RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 NFIBO00712 420 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 MED14OSP0DP75 135 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 GLI4P10075 376 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 YBX3P16989 372 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS50-214ENST00000477935 RAP1GAPP47736 663 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 RASA3Q14644 834 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 CBX2Q14781 532 aaPredicted RBP6.95□□□□□ -1.3
VPS50-214ENST00000477935 PLEKHN1Q494U1 663 aaPredicted RBP6.95□□□□□ -1.3
VPS50-214ENST00000477935 MTERF2Q49AM1 385 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 SLC35F1Q5T1Q4 408 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 ACBD5Q5T8D3 534 aaPredicted RBP6.95□□□□□ -1.3
VPS50-214ENST00000477935 DENND5AQ6IQ26 1287 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 SPATC1Q76KD6 591 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 PPIL6Q8IXY8 311 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 LRRC47Q8N1G4 583 aaKnown RBP6.95□□□□□ -1.3
VPS50-214ENST00000477935 KCTD13Q8WZ19 329 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 DIO2Q92813 273 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 MTA3Q9BTC8 594 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 AARSD1Q9BTE6 412 aaKnown RBP6.95□□□□□ -1.3
VPS50-214ENST00000477935 SGPP1Q9BX95 441 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 GCM1Q9NP62 436 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 SIRT5Q9NXA8 310 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 NLRP1Q9C000 1473 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 SETD1AO15047 1707 aaKnown RBP6.95□□□□□ -1.3
VPS50-214ENST00000477935 SYNMO15061 1565 aa6.95□□□□□ -1.3
VPS50-214ENST00000477935 DEPDC5O75140 1603 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 MYO5CQ9NQX4 1742 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 RANGAP1P46060 587 aaPredicted RBP6.94□□□□□ -1.3
VPS50-214ENST00000477935 RBM6P78332 1123 aaKnown RBP6.94□□□□□ -1.3
VPS50-214ENST00000477935 DLG4P78352 724 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 KCNAB2Q13303 367 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 TESK1Q15569 626 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 SOGA3Q5TF21 947 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 ZC3H14Q6PJT7 736 aaKnown RBP6.94□□□□□ -1.3
VPS50-214ENST00000477935 ATG14Q6ZNE5 492 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 TMC6Q7Z403 805 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 CABP7Q86V35 215 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 PMFBP1Q8TBY8 1022 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 USP33Q8TEY7 942 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 DPF3Q92784 378 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 DNAJC2Q99543 621 aaKnown RBP6.94□□□□□ -1.3
VPS50-214ENST00000477935 CD320Q9NPF0 282 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS50-214ENST00000477935 ABCC1P33527 1531 aa6.94□□□□□ -1.3
VPS50-214ENST00000477935 TROQ12816 1431 aaPredicted RBP6.93□□□□□ -1.3
VPS50-214ENST00000477935 POLR1AO95602 1720 aaPredicted RBP6.93□□□□□ -1.3
VPS50-214ENST00000477935 CDK13Q14004 1512 aaKnown RBP6.93□□□□□ -1.3
VPS50-214ENST00000477935 DLX3O60479 287 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 FUCA1P04066 466 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 MAPKAPK2P49137 400 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 RBM10P98175 930 aaKnown RBP6.93□□□□□ -1.3
VPS50-214ENST00000477935 MAP4K2Q12851 820 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 PLEKHO2Q8TD55 490 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 BTG4Q9NY30 223 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 MARCH2Q9P0N8 246 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 HCFC2Q9Y5Z7 792 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 FGD6Q6ZV73 1430 aa6.93□□□□□ -1.3
VPS50-214ENST00000477935 A2MP01023 1474 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 LRRC9Q6ZRR7 1453 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 ZC3H12DA2A288 527 aaKnown RBP6.92□□□□□ -1.3
VPS50-214ENST00000477935 TCAF2A6NFQ2 919 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 F8W031 263 aaPredicted RBP6.92□□□□□ -1.3
VPS50-214ENST00000477935 FGFR1P11362 822 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 LCP1P13796 627 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 LTBRP36941 435 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 SSRP1Q08945 709 aaKnown RBP6.92□□□□□ -1.3
VPS50-214ENST00000477935 YOD1Q5VVQ6 348 aaPredicted RBP6.92□□□□□ -1.3
VPS50-214ENST00000477935 WWC2Q6AWC2 1192 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 TEX2Q8IWB9 1127 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 NETO2Q8NC67 525 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 RCBTB1Q8NDN9 531 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 DEPDC7Q96QD5 511 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 SPATA9Q9BWV2 254 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 CNTD2Q9H8S5 307 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 RXFP1Q9HBX9 757 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 SNTG2Q9NY99 539 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 PFDN2Q9UHV9 154 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 DBR1Q9UK59 544 aaKnown RBP6.92□□□□□ -1.3
VPS50-214ENST00000477935 TIMM13Q9Y5L4 95 aaPredicted RBP6.92□□□□□ -1.3
VPS50-214ENST00000477935 CLTCQ00610 1675 aaKnown RBP6.92□□□□□ -1.3
VPS50-214ENST00000477935 WASHC2CQ9Y4E1 1318 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 KIDINS220Q9ULH0 1771 aa6.92□□□□□ -1.3
VPS50-214ENST00000477935 UGGT1Q9NYU2 1555 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 TRAV20A0A0B4J274 112 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 FAM221BA6H8Z2 402 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 DBX1A6NMT0 343 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 PRODHO43272 600 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 NTRK1P04629 796 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 PABPC1P11940 636 aaKnown RBP6.91□□□□□ -1.3
VPS50-214ENST00000477935 KCNA6P17658 529 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 EPHB3P54753 998 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 RPL11P62913 178 aaKnown RBP6.91□□□□□ -1.3
VPS50-214ENST00000477935 ZNF200P98182 395 aaPredicted RBP6.91□□□□□ -1.3
VPS50-214ENST00000477935 LRP10Q7Z4F1 713 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 SRPK1Q96SB4 655 aaKnown RBP6.91□□□□□ -1.3
VPS50-214ENST00000477935 FBXL7Q9UJT9 491 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 SMG5Q9UPR3 1016 aaKnown RBP6.91□□□□□ -1.3
VPS50-214ENST00000477935 NPFFR2Q9Y5X5 522 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 EID1Q9Y6B2 187 aa6.91□□□□□ -1.3
VPS50-214ENST00000477935 TMEM94Q12767 1356 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms