RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 AEBP2Q6ZN18 517 aaPredicted RBP25.56■■□□□ 1.68
VPS50-214ENST00000477935 CHIC1Q5VXU3 224 aa24.9■■□□□ 1.58
VPS50-214ENST00000477935 PHF23Q9BUL5 403 aaPredicted RBP21.9■■□□□ 1.1
VPS50-214ENST00000477935 SENP3Q9H4L4 574 aaPredicted RBP21.68■■□□□ 1.06
VPS50-214ENST00000477935 PLPPR3Q6T4P5 718 aa20.2■□□□□ 0.82
VPS50-214ENST00000477935 FOXD1Q16676 465 aa20.13■□□□□ 0.81
VPS50-214ENST00000477935 PPP6R1Q9UPN7 881 aa19.34■□□□□ 0.69
VPS50-214ENST00000477935 ADRA2BP18089 450 aa19.31■□□□□ 0.68
VPS50-214ENST00000477935 PIAS4Q8N2W9 510 aaPredicted RBP18.97■□□□□ 0.63
VPS50-214ENST00000477935 MSH5O43196 834 aa18.58■□□□□ 0.56
VPS50-214ENST00000477935 PPP4R3CPQ6ZMV5 832 aa17.78■□□□□ 0.44
VPS50-214ENST00000477935 SCAF1Q9H7N4 1312 aaKnown RBP17.65■□□□□ 0.42
VPS50-214ENST00000477935 MAPK8IP2Q13387 824 aaPredicted RBP17.54■□□□□ 0.4
VPS50-214ENST00000477935 KCNA4P22459 653 aa17.32■□□□□ 0.36
VPS50-214ENST00000477935 CNKSR2Q8WXI2 1034 aa17.3■□□□□ 0.36
VPS50-214ENST00000477935 NCBP3Q53F19 620 aaKnown RBP17.29■□□□□ 0.36
VPS50-214ENST00000477935 DMRT2Q9Y5R5 561 aa17.29■□□□□ 0.36
VPS50-214ENST00000477935 POTEDQ86YR6 584 aa17.08■□□□□ 0.32
VPS50-214ENST00000477935 NPM3O75607 178 aaKnown RBP17.06■□□□□ 0.32
VPS50-214ENST00000477935 RNF216Q9NWF9 866 aaPredicted RBP16.98■□□□□ 0.31
VPS50-214ENST00000477935 HOXD11P31277 338 aaPredicted RBP16.92■□□□□ 0.3
VPS50-214ENST00000477935 DNAJC5BQ9UF47 199 aa16.56■□□□□ 0.24
VPS50-214ENST00000477935 DCAF8L1A6NGE4 600 aa16.55■□□□□ 0.24
VPS50-214ENST00000477935 SLC4A1APQ9BWU0 796 aaKnown RBP16.47■□□□□ 0.23
VPS50-214ENST00000477935 SLC4A2P04920 1241 aa16.12■□□□□ 0.17
VPS50-214ENST00000477935 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.11■□□□□ 0.17
VPS50-214ENST00000477935 EHMT2Q96KQ7 1210 aa15.96■□□□□ 0.15
VPS50-214ENST00000477935 FOXD4L1Q9NU39 408 aa15.96■□□□□ 0.15
VPS50-214ENST00000477935 ZBTB22O15209 634 aa15.94■□□□□ 0.14
VPS50-214ENST00000477935 RNF39Q9H2S5 420 aa15.92■□□□□ 0.14
VPS50-214ENST00000477935 U3KPZ7 1027 aaPredicted RBP15.86■□□□□ 0.13
VPS50-214ENST00000477935 CSRNP3Q8WYN3 585 aa15.81■□□□□ 0.12
VPS50-214ENST00000477935 MYCNP04198 464 aaPredicted RBP15.76■□□□□ 0.11
VPS50-214ENST00000477935 C1QBPQ07021 282 aaKnown RBP15.72■□□□□ 0.11
VPS50-214ENST00000477935 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.64■□□□□ 0.09
VPS50-214ENST00000477935 HNRNPUL2Q1KMD3 747 aaKnown RBP15.64■□□□□ 0.09
VPS50-214ENST00000477935 SAMD1Q6SPF0 538 aaPredicted RBP15.58■□□□□ 0.08
VPS50-214ENST00000477935 CACNB1Q02641 598 aaPredicted RBP15.54■□□□□ 0.08
VPS50-214ENST00000477935 APLP2Q06481 763 aa15.47■□□□□ 0.07
VPS50-214ENST00000477935 SPINK5Q9NQ38 1064 aaPredicted RBP15.44■□□□□ 0.06
VPS50-214ENST00000477935 ATXN8OSP0DMR3 200 aa15.38■□□□□ 0.05
VPS50-214ENST00000477935 CAPN15O75808 1086 aa15.37■□□□□ 0.05
VPS50-214ENST00000477935 ATF5Q9Y2D1 282 aaPredicted RBP15.35■□□□□ 0.05
VPS50-214ENST00000477935 TRHP20396 242 aaPredicted RBP15.29■□□□□ 0.04
VPS50-214ENST00000477935 ZNF219Q9P2Y4 722 aaPredicted RBP15.29■□□□□ 0.04
VPS50-214ENST00000477935 DSG3P32926 999 aa15.14■□□□□ 0.01
VPS50-214ENST00000477935 ABCB7O75027 752 aa15.07■□□□□ 0
VPS50-214ENST00000477935 POLA2Q14181 598 aa15.03■□□□□ -0
VPS50-214ENST00000477935 ZBTB12Q9Y330 459 aaPredicted RBP14.76□□□□□ -0.05
VPS50-214ENST00000477935 FBLN2P98095 1184 aa14.69□□□□□ -0.06
VPS50-214ENST00000477935 MKRN4PQ13434 485 aaPredicted RBP14.68□□□□□ -0.06
VPS50-214ENST00000477935 OSCARQ8IYS5 282 aa14.54□□□□□ -0.08
VPS50-214ENST00000477935 RBM42Q9BTD8 480 aaKnown RBP14.41□□□□□ -0.1
VPS50-214ENST00000477935 SPDYE2BA6NHP3 402 aa14.37□□□□□ -0.11
VPS50-214ENST00000477935 SPDYE6P0CI01 402 aa14.37□□□□□ -0.11
VPS50-214ENST00000477935 SPDYE2Q495Y8 402 aa14.37□□□□□ -0.11
VPS50-214ENST00000477935 SPDYE4A6NLX3 237 aa14.32□□□□□ -0.12
VPS50-214ENST00000477935 ZNF692Q9BU19 519 aaPredicted RBP14.32□□□□□ -0.12
VPS50-214ENST00000477935 FKBP8Q14318 412 aa14.29□□□□□ -0.12
VPS50-214ENST00000477935 SSUH2Q9Y2M2 353 aa14.26□□□□□ -0.13
VPS50-214ENST00000477935 AKT1S1Q96B36 256 aa14.23□□□□□ -0.13
VPS50-214ENST00000477935 PABPN1Q86U42 306 aaKnown RBP eCLIP14.13□□□□□ -0.15
VPS50-214ENST00000477935 REM2Q8IYK8 340 aaPredicted RBP14.09□□□□□ -0.15
VPS50-214ENST00000477935 PROM2Q8N271 834 aa14.08□□□□□ -0.16
VPS50-214ENST00000477935 SPDYE1Q8NFV5 336 aaPredicted RBP13.95□□□□□ -0.18
VPS50-214ENST00000477935 PITPNM1O00562 1244 aa13.93□□□□□ -0.18
VPS50-214ENST00000477935 CLEC11AQ9Y240 323 aa13.91□□□□□ -0.18
VPS50-214ENST00000477935 STAG3Q9UJ98 1225 aa13.86□□□□□ -0.19
VPS50-214ENST00000477935 CHRDL2Q6WN34 429 aa13.84□□□□□ -0.19
VPS50-214ENST00000477935 PRR29P0C7W0 189 aa13.78□□□□□ -0.2
VPS50-214ENST00000477935 FBXO3Q9UK99 471 aa13.78□□□□□ -0.2
VPS50-214ENST00000477935 FXR2P51116 673 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS50-214ENST00000477935 PIP4P2Q8N4L2 257 aa13.66□□□□□ -0.22
VPS50-214ENST00000477935 VASPP50552 380 aaPredicted RBP13.6□□□□□ -0.23
VPS50-214ENST00000477935 CREBZFQ9NS37 354 aa13.59□□□□□ -0.23
VPS50-214ENST00000477935 PRKAR2AP13861 404 aaKnown RBP13.58□□□□□ -0.24
VPS50-214ENST00000477935 CHADLQ6NUI6 762 aa13.58□□□□□ -0.24
VPS50-214ENST00000477935 MIER1Q8N108 512 aa13.57□□□□□ -0.24
VPS50-214ENST00000477935 PLCD3Q8N3E9 789 aa13.55□□□□□ -0.24
VPS50-214ENST00000477935 PLEKHG5O94827 1062 aa13.51□□□□□ -0.25
VPS50-214ENST00000477935 POTEHQ6S545 545 aa13.47□□□□□ -0.25
VPS50-214ENST00000477935 MNX1P50219 401 aaPredicted RBP13.45□□□□□ -0.26
VPS50-214ENST00000477935 FARP1Q9Y4F1 1045 aaPredicted RBP13.44□□□□□ -0.26
VPS50-214ENST00000477935 IFNLR1Q8IU57 520 aaPredicted RBP13.43□□□□□ -0.26
VPS50-214ENST00000477935 ZBTB47Q9UFB7 747 aaPredicted RBP13.4□□□□□ -0.26
VPS50-214ENST00000477935 KLHL34Q8N239 644 aa13.37□□□□□ -0.27
VPS50-214ENST00000477935 NPM1P06748 294 aaKnown RBP eCLIP13.35□□□□□ -0.27
VPS50-214ENST00000477935 SPOCK2Q92563 424 aa13.25□□□□□ -0.29
VPS50-214ENST00000477935 NUBP1P53384 320 aa13.24□□□□□ -0.29
VPS50-214ENST00000477935 HAX1O00165 279 aa13.22□□□□□ -0.29
VPS50-214ENST00000477935 C19orf67A6NJJ6 358 aa13.21□□□□□ -0.29
VPS50-214ENST00000477935 RASEFQ8IZ41 740 aa13.2□□□□□ -0.3
VPS50-214ENST00000477935 CD44P16070 742 aaKnown RBP13.19□□□□□ -0.3
VPS50-214ENST00000477935 PAK3O75914 559 aaPredicted RBP13.14□□□□□ -0.31
VPS50-214ENST00000477935 FAM212AQ96EL1 285 aa13.14□□□□□ -0.31
VPS50-214ENST00000477935 TSPYL2Q9H2G4 693 aaPredicted RBP13.14□□□□□ -0.31
VPS50-214ENST00000477935 EVX2Q03828 476 aa13.12□□□□□ -0.31
VPS50-214ENST00000477935 ZRANB1Q9UGI0 708 aa13.11□□□□□ -0.31
VPS50-214ENST00000477935 DCAF8Q5TAQ9 597 aa13.1□□□□□ -0.31
VPS50-214ENST00000477935 GSE1Q14687 1217 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms