RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PSEN2P49810 448 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 CHMP4BP1P59074 171 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 HIC1Q14526 733 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 GPNMBQ14956 572 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 TMTC3Q6ZXV5 915 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 RPUSD2Q8IZ73 545 aaKnown RBP21.44■■□□□ 1.02
COL7A1-209ENST00000474432 FANCBQ8NB91 859 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 TIFAQ96CG3 184 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 TCEANC2Q96MN5 208 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 NEK1Q96PY6 1258 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 HDAC6Q9UBN7 1215 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 SLC12A7Q9Y666 1083 aa21.44■■□□□ 1.02
COL7A1-209ENST00000474432 EYSQ5T1H1 3165 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 RBAK-RBAKDNI3L0D1 243 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 PPFIA4O75335 1185 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 CALM1P0DP23 149 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 CALM2P0DP24 149 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 CALM3P0DP25 149 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 PTGISQ16647 500 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 C16orf70Q9BSU1 422 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 ZNF576Q9H609 170 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 GTF2IRD1Q9UHL9 959 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 BRPF3Q9ULD4 1205 aa21.43■■□□□ 1.02
COL7A1-209ENST00000474432 SPATA31C2B4DYI2 1134 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 FUT2Q10981 343 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 MYO9BQ13459 2157 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 MFSD10Q14728 455 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 RNF20Q5VTR2 975 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 APOA5Q6Q788 366 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 DEFB128Q7Z7B8 93 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 KCNB2Q92953 911 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 SPATA33Q96N06 139 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 ALG1Q9BT22 464 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 YBX2Q9Y2T7 364 aaKnown RBP21.42■■□□□ 1.02
COL7A1-209ENST00000474432 TELO2Q9Y4R8 837 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 A0A0C4DFX4 3053 aa21.42■■□□□ 1.02
COL7A1-209ENST00000474432 PFKMP08237 780 aa21.41■■□□□ 1.02
COL7A1-209ENST00000474432 RBL2Q08999 1139 aa21.41■■□□□ 1.02
COL7A1-209ENST00000474432 KIAA0753Q2KHM9 967 aa21.41■■□□□ 1.02
COL7A1-209ENST00000474432 DHX32Q7L7V1 743 aaKnown RBP21.41■■□□□ 1.02
COL7A1-209ENST00000474432 MICU3Q86XE3 530 aa21.41■■□□□ 1.02
COL7A1-209ENST00000474432 CCDC82Q8N4S0 544 aa21.41■■□□□ 1.02
COL7A1-209ENST00000474432 WNT8BQ93098 351 aa21.41■■□□□ 1.02
COL7A1-209ENST00000474432 RTEL1Q9NZ71 1219 aa21.41■■□□□ 1.02
COL7A1-209ENST00000474432 SEC63Q9UGP8 760 aaKnown RBP21.41■■□□□ 1.02
COL7A1-209ENST00000474432 UNC80Q8N2C7 3258 aa21.4■■□□□ 1.02
COL7A1-209ENST00000474432 PTPRSQ13332 1948 aa21.4■■□□□ 1.02
COL7A1-209ENST00000474432 STAM2O75886 525 aa21.4■■□□□ 1.02
COL7A1-209ENST00000474432 RFC2P35250 354 aa21.4■■□□□ 1.02
COL7A1-209ENST00000474432 ZNF200P98182 395 aaPredicted RBP21.4■■□□□ 1.02
COL7A1-209ENST00000474432 TRIM71Q2Q1W2 868 aaKnown RBP21.4■■□□□ 1.02
COL7A1-209ENST00000474432 PCNX4Q63HM2 1172 aa21.4■■□□□ 1.02
COL7A1-209ENST00000474432 SMARCC2Q8TAQ2 1214 aa21.4■■□□□ 1.02
COL7A1-209ENST00000474432 FAM217BQ9NTX9 383 aaPredicted RBP21.4■■□□□ 1.02
COL7A1-209ENST00000474432 CNTNAP5Q8WYK1 1306 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 RABGGTBP53611 331 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 BFSP2Q13515 415 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 TYW1BQ6NUM6 668 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 TRAF7Q6Q0C0 670 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 C7orf31Q8N865 590 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 RETREG2Q8NC44 543 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 CCDC136Q96JN2 1154 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 KATNAL1Q9BW62 490 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 MTIF3Q9H2K0 278 aaKnown RBP21.39■■□□□ 1.01
COL7A1-209ENST00000474432 PSTPIP2Q9H939 334 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 NOD1Q9Y239 953 aa21.39■■□□□ 1.01
COL7A1-209ENST00000474432 FIBPO43427 364 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 HOXC8P31273 242 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 UBE2SQ16763 222 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 GNPTABQ3T906 1256 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 XRRA1Q6P2D8 792 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 MAFAQ8NHW3 353 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-209ENST00000474432 CAGE1Q8TC20 777 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 AFAP1L1Q8TED9 768 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 NKX2-4Q9H2Z4 354 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 MLXIPQ9HAP2 919 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 SLC4A7Q9Y6M7 1214 aa21.38■■□□□ 1.01
COL7A1-209ENST00000474432 CUL9Q8IWT3 2517 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 CHD7Q9P2D1 2997 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 CPA1P15085 419 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 MYOGP15173 224 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 FOSL2P15408 326 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 RAB30Q15771 203 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 TCTN1Q2MV58 587 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 METTL7BQ6UX53 244 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 CYFIP1Q7L576 1253 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 CUL5Q93034 780 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 GPR20Q99678 358 aa21.37■■□□□ 1.01
COL7A1-209ENST00000474432 PRUNE2Q8WUY3 3088 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 ATP9AO75110 1047 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 LGALS2P05162 132 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 CKBP12277 381 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 SELPP16109 830 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 ITGB5P18084 799 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 CDC27P30260 824 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 PTK7Q13308 1070 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 WWC2Q6AWC2 1192 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 LRRC8DQ7L1W4 858 aa21.36■■□□□ 1.01
COL7A1-209ENST00000474432 ZBBXA8MT70 800 aa21.35■■□□□ 1.01
COL7A1-209ENST00000474432 H3BRB1 525 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms