RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 CELF3Q5SZQ8 465 aaKnown RBP22.17■■□□□ 1.14
COL9A3-206ENST00000466532 LRRC8DQ7L1W4 858 aa22.17■■□□□ 1.14
COL9A3-206ENST00000466532 PHOSPHO2Q8TCD6 241 aa22.17■■□□□ 1.14
COL9A3-206ENST00000466532 PIBF1Q8WXW3 757 aa22.17■■□□□ 1.14
COL9A3-206ENST00000466532 SYMPKQ92797 1274 aaKnown RBP22.17■■□□□ 1.14
COL9A3-206ENST00000466532 SPATA33Q96N06 139 aa22.17■■□□□ 1.14
COL9A3-206ENST00000466532 SPTBN5Q9NRC6 3674 aaKnown RBP22.17■■□□□ 1.14
COL9A3-206ENST00000466532 TRANK1O15050 2925 aa22.17■■□□□ 1.14
COL9A3-206ENST00000466532 BAIAP3O94812 1187 aa22.16■■□□□ 1.14
COL9A3-206ENST00000466532 CA3P07451 260 aa22.16■■□□□ 1.14
COL9A3-206ENST00000466532 TGFB3P10600 412 aa22.16■■□□□ 1.14
COL9A3-206ENST00000466532 HOXD8P13378 290 aaPredicted RBP22.16■■□□□ 1.14
COL9A3-206ENST00000466532 SELPP16109 830 aa22.16■■□□□ 1.14
COL9A3-206ENST00000466532 UBA1P22314 1058 aaKnown RBP22.16■■□□□ 1.14
COL9A3-206ENST00000466532 SP2Q02086 613 aa22.16■■□□□ 1.14
COL9A3-206ENST00000466532 GPKOWQ92917 476 aaPredicted RBP eCLIP22.16■■□□□ 1.14
COL9A3-206ENST00000466532 COL4A4P53420 1690 aaPredicted RBP22.16■■□□□ 1.14
COL9A3-206ENST00000466532 MICAL3Q7RTP6 2002 aa22.16■■□□□ 1.14
COL9A3-206ENST00000466532 PPFIA4O75335 1185 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 CKBP12277 381 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 KCNJ6P48051 423 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 RBL2Q08999 1139 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 TJAP1Q5JTD0 557 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 CASC1Q6TDU7 716 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 HERC6Q8IVU3 1022 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 ZNF654Q8IZM8 581 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 CTCFLQ8NI51 663 aaPredicted RBP22.15■■□□□ 1.14
COL9A3-206ENST00000466532 MYL10Q9BUA6 226 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 MLXIPQ9HAP2 919 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 LY9Q9HBG7 655 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 REV3LO60673 3130 aa22.15■■□□□ 1.14
COL9A3-206ENST00000466532 PARNO95453 639 aaKnown RBP22.14■■□□□ 1.13
COL9A3-206ENST00000466532 PTK7Q13308 1070 aa22.14■■□□□ 1.13
COL9A3-206ENST00000466532 GPNMBQ14956 572 aa22.14■■□□□ 1.13
COL9A3-206ENST00000466532 MAP3K14Q99558 947 aa22.14■■□□□ 1.13
COL9A3-206ENST00000466532 SPZ1Q9BXG8 430 aa22.14■■□□□ 1.13
COL9A3-206ENST00000466532 THEGQ9P2T0 379 aa22.14■■□□□ 1.13
COL9A3-206ENST00000466532 FRMPD4Q14CM0 1322 aa22.13■■□□□ 1.13
COL9A3-206ENST00000466532 KIF28PB7ZC32 967 aa22.13■■□□□ 1.13
COL9A3-206ENST00000466532 PRC1O43663 620 aa22.13■■□□□ 1.13
COL9A3-206ENST00000466532 DDAH1O94760 285 aa22.13■■□□□ 1.13
COL9A3-206ENST00000466532 KIF5BP33176 963 aa22.13■■□□□ 1.13
COL9A3-206ENST00000466532 GNPTABQ3T906 1256 aa22.13■■□□□ 1.13
COL9A3-206ENST00000466532 RRP36Q96EU6 259 aaKnown RBP22.13■■□□□ 1.13
COL9A3-206ENST00000466532 CERS4Q9HA82 394 aa22.13■■□□□ 1.13
COL9A3-206ENST00000466532 NBNO60934 754 aa22.12■■□□□ 1.13
COL9A3-206ENST00000466532 MRPS9P82933 396 aaKnown RBP22.12■■□□□ 1.13
COL9A3-206ENST00000466532 ZNF200P98182 395 aaPredicted RBP22.12■■□□□ 1.13
COL9A3-206ENST00000466532 CNKSR3Q6P9H4 555 aa22.12■■□□□ 1.13
COL9A3-206ENST00000466532 NFXL1Q6ZNB6 911 aa22.12■■□□□ 1.13
COL9A3-206ENST00000466532 ATXN2LQ8WWM7 1075 aaKnown RBP22.12■■□□□ 1.13
COL9A3-206ENST00000466532 C16orf70Q9BSU1 422 aa22.12■■□□□ 1.13
COL9A3-206ENST00000466532 MTA3Q9BTC8 594 aa22.12■■□□□ 1.13
COL9A3-206ENST00000466532 LSG1Q9H089 658 aaKnown RBP22.12■■□□□ 1.13
COL9A3-206ENST00000466532 SIP14410 1827 aa22.12■■□□□ 1.13
COL9A3-206ENST00000466532 TCF20Q9UGU0 1960 aaKnown RBP22.12■■□□□ 1.13
COL9A3-206ENST00000466532 PRRC2BQ5JSZ5 2229 aaKnown RBP22.11■■□□□ 1.13
COL9A3-206ENST00000466532 STAM2O75886 525 aa22.11■■□□□ 1.13
COL9A3-206ENST00000466532 CXCL10P02778 98 aa22.11■■□□□ 1.13
COL9A3-206ENST00000466532 MCM5P33992 734 aa22.11■■□□□ 1.13
COL9A3-206ENST00000466532 WDR5P61964 334 aaKnown RBP22.11■■□□□ 1.13
COL9A3-206ENST00000466532 TRIM71Q2Q1W2 868 aaKnown RBP22.11■■□□□ 1.13
COL9A3-206ENST00000466532 MICALL1Q8N3F8 863 aa22.11■■□□□ 1.13
COL9A3-206ENST00000466532 SMARCC2Q8TAQ2 1214 aa22.11■■□□□ 1.13
COL9A3-206ENST00000466532 CUL5Q93034 780 aa22.11■■□□□ 1.13
COL9A3-206ENST00000466532 WNT8BQ93098 351 aa22.11■■□□□ 1.13
COL9A3-206ENST00000466532 BCAS3Q9H6U6 928 aa22.11■■□□□ 1.13
COL9A3-206ENST00000466532 SEC63Q9UGP8 760 aaKnown RBP22.11■■□□□ 1.13
COL9A3-206ENST00000466532 CCDC69A6NI79 296 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 RFXAPO00287 272 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 NOP56O00567 594 aaKnown RBP22.1■■□□□ 1.13
COL9A3-206ENST00000466532 SH2B2O14492 632 aaPredicted RBP22.1■■□□□ 1.13
COL9A3-206ENST00000466532 TLL1O43897 1013 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 SMARCA1P28370 1054 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 ICAM3P32942 547 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 TAP1Q03518 808 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 HIC1Q14526 733 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 ZNF618Q5T7W0 954 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 USP17L6PQ6QN14 398 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 TMTC2Q8N394 836 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 TMEM87BQ96K49 555 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 INPP4AQ96PE3 977 aaPredicted RBP22.1■■□□□ 1.13
COL9A3-206ENST00000466532 LZTS2Q9BRK4 669 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 ESYT1Q9BSJ8 1104 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 RTEL1Q9NZ71 1219 aa22.1■■□□□ 1.13
COL9A3-206ENST00000466532 H3BRB1 525 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 SLC27A2O14975 620 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 ARHGEF15O94989 841 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 PLEKHA8P1O95397 391 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 LGALS2P05162 132 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 RXRAP19793 462 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 GNAQP50148 359 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 NEDD9Q14511 834 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 TRAF7Q6Q0C0 670 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 TMCO2Q7Z6W1 182 aaPredicted RBP22.09■■□□□ 1.13
COL9A3-206ENST00000466532 ARNTL2Q8WYA1 636 aa22.09■■□□□ 1.13
COL9A3-206ENST00000466532 TUT1Q9H6E5 874 aaKnown RBP22.09■■□□□ 1.13
COL9A3-206ENST00000466532 C17orf102A2RUQ5 167 aa22.08■■□□□ 1.13
COL9A3-206ENST00000466532 SPATA31C2B4DYI2 1134 aa22.08■■□□□ 1.13
COL9A3-206ENST00000466532 FIBPO43427 364 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms