RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 LRRC8DQ7L1W4 858 aa23.95■■□□□ 1.42
COL6A1-203ENST00000466285 SUPT16HQ9Y5B9 1047 aaKnown RBP23.95■■□□□ 1.42
COL6A1-203ENST00000466285 SIP14410 1827 aa23.95■■□□□ 1.42
COL6A1-203ENST00000466285 CKBP12277 381 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 ACTN1P12814 892 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 HOXD8P13378 290 aaPredicted RBP23.94■■□□□ 1.42
COL6A1-203ENST00000466285 RBL2Q08999 1139 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 DGKDQ16760 1214 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 KIAA0753Q2KHM9 967 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 PPTC7Q8NI37 304 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 ADAMTS19Q8TE59 1207 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 AFAP1L1Q8TED9 768 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 PIBF1Q8WXW3 757 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 SYMPKQ92797 1274 aaKnown RBP23.94■■□□□ 1.42
COL6A1-203ENST00000466285 MAF1Q9H063 256 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 RIOX1Q9H6W3 641 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 MTCH2Q9Y6C9 303 aa23.94■■□□□ 1.42
COL6A1-203ENST00000466285 BDP1A6H8Y1 2624 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 E7EWF7 191 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 GGPS1O95749 300 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 SELPP16109 830 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 CASTP20810 708 aaKnown RBP23.93■■□□□ 1.42
COL6A1-203ENST00000466285 TROAPQ12815 778 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 MYSM1Q5VVJ2 828 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 CAGE1Q8TC20 777 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 ATXN2LQ8WWM7 1075 aaKnown RBP23.93■■□□□ 1.42
COL6A1-203ENST00000466285 ARNTL2Q8WYA1 636 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 MYL10Q9BUA6 226 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 OSBPL7Q9BZF2 842 aa23.93■■□□□ 1.42
COL6A1-203ENST00000466285 NCOR1O75376 2440 aa23.92■■□□□ 1.42
COL6A1-203ENST00000466285 IFIT3O14879 490 aaKnown RBP23.92■■□□□ 1.42
COL6A1-203ENST00000466285 FCHSD1Q86WN1 690 aa23.92■■□□□ 1.42
COL6A1-203ENST00000466285 DHX37Q8IY37 1157 aaKnown RBP23.92■■□□□ 1.42
COL6A1-203ENST00000466285 TNFRSF10AO00220 468 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 LPXNO60711 386 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 KCNQ1P51787 676 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 SEMA3FQ13275 785 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 LAMC2Q13753 1193 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 CELF3Q5SZQ8 465 aaKnown RBP23.91■■□□□ 1.42
COL6A1-203ENST00000466285 ZNF618Q5T7W0 954 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 VSIG10LQ86VR7 867 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 MB21D2Q8IYB1 491 aaPredicted RBP23.91■■□□□ 1.42
COL6A1-203ENST00000466285 C7orf31Q8N865 590 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 C16orf70Q9BSU1 422 aa23.91■■□□□ 1.42
COL6A1-203ENST00000466285 BRWD1Q9NSI6 2320 aa23.9■■□□□ 1.42
COL6A1-203ENST00000466285 SGSM2O43147 1006 aa23.9■■□□□ 1.42
COL6A1-203ENST00000466285 CXCL10P02778 98 aa23.9■■□□□ 1.42
COL6A1-203ENST00000466285 MRPS9P82933 396 aaKnown RBP23.9■■□□□ 1.42
COL6A1-203ENST00000466285 PHOSPHO2Q8TCD6 241 aa23.9■■□□□ 1.42
COL6A1-203ENST00000466285 GDPD5Q8WTR4 605 aa23.9■■□□□ 1.42
COL6A1-203ENST00000466285 SPATA33Q96N06 139 aa23.9■■□□□ 1.42
COL6A1-203ENST00000466285 FRMPD4Q14CM0 1322 aa23.89■■□□□ 1.42
COL6A1-203ENST00000466285 ATG2AQ2TAZ0 1938 aa23.89■■□□□ 1.42
COL6A1-203ENST00000466285 BAIAP3O94812 1187 aa23.89■■□□□ 1.41
COL6A1-203ENST00000466285 MRPS5P82675 430 aaKnown RBP23.89■■□□□ 1.41
COL6A1-203ENST00000466285 GRB10Q13322 594 aa23.89■■□□□ 1.41
COL6A1-203ENST00000466285 CCDC155Q8N6L0 562 aa23.89■■□□□ 1.41
COL6A1-203ENST00000466285 RAPGEFL1Q9UHV5 662 aa23.89■■□□□ 1.41
COL6A1-203ENST00000466285 TLL1O43897 1013 aa23.88■■□□□ 1.41
COL6A1-203ENST00000466285 WTAPQ15007 396 aa23.88■■□□□ 1.41
COL6A1-203ENST00000466285 CNKSR3Q6P9H4 555 aa23.88■■□□□ 1.41
COL6A1-203ENST00000466285 TRIM50Q86XT4 487 aa23.88■■□□□ 1.41
COL6A1-203ENST00000466285 IGDCC4Q8TDY8 1250 aa23.88■■□□□ 1.41
COL6A1-203ENST00000466285 U3KPZ7 1027 aaPredicted RBP23.88■■□□□ 1.41
COL6A1-203ENST00000466285 GCOM1H8Y6P7 765 aaPredicted RBP23.87■■□□□ 1.41
COL6A1-203ENST00000466285 POLR2MP0CAP2 368 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 CCND2P30279 289 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 KCNJ6P48051 423 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 TRDNQ13061 729 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 PTK7Q13308 1070 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 MKRN4PQ13434 485 aaPredicted RBP23.87■■□□□ 1.41
COL6A1-203ENST00000466285 FAM117BQ6P1L5 589 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.87■■□□□ 1.41
COL6A1-203ENST00000466285 UHRF1Q96T88 793 aaPredicted RBP23.87■■□□□ 1.41
COL6A1-203ENST00000466285 KATNAL1Q9BW62 490 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 LY9Q9HBG7 655 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 MTUS1Q9ULD2 1270 aa23.87■■□□□ 1.41
COL6A1-203ENST00000466285 RBM8AQ9Y5S9 174 aaKnown RBP23.87■■□□□ 1.41
COL6A1-203ENST00000466285 PNMA6FA0A0J9YX94 578 aa23.86■■□□□ 1.41
COL6A1-203ENST00000466285 PLEKHA8P1O95397 391 aa23.86■■□□□ 1.41
COL6A1-203ENST00000466285 LGALS2P05162 132 aa23.86■■□□□ 1.41
COL6A1-203ENST00000466285 POU3F3P20264 500 aaPredicted RBP23.86■■□□□ 1.41
COL6A1-203ENST00000466285 RALYLQ86SE5 291 aaKnown RBP23.86■■□□□ 1.41
COL6A1-203ENST00000466285 SKAP1Q86WV1 359 aa23.86■■□□□ 1.41
COL6A1-203ENST00000466285 RAB11FIP4Q86YS3 637 aa23.86■■□□□ 1.41
COL6A1-203ENST00000466285 NCOA7Q8NI08 942 aa23.86■■□□□ 1.41
COL6A1-203ENST00000466285 NLRC5Q86WI3 1866 aa23.85■■□□□ 1.41
COL6A1-203ENST00000466285 BMP1P13497 986 aa23.85■■□□□ 1.41
COL6A1-203ENST00000466285 RXRAP19793 462 aa23.85■■□□□ 1.41
COL6A1-203ENST00000466285 HOXC8P31273 242 aa23.85■■□□□ 1.41
COL6A1-203ENST00000466285 SKIV2LQ15477 1246 aaKnown RBP23.85■■□□□ 1.41
COL6A1-203ENST00000466285 SERINC5Q86VE9 423 aa23.85■■□□□ 1.41
COL6A1-203ENST00000466285 CMTR1Q8N1G2 835 aaKnown RBP23.85■■□□□ 1.41
COL6A1-203ENST00000466285 RTEL1Q9NZ71 1219 aa23.85■■□□□ 1.41
COL6A1-203ENST00000466285 USP17L6PQ6QN14 398 aa23.84■■□□□ 1.41
COL6A1-203ENST00000466285 ZNF654Q8IZM8 581 aa23.84■■□□□ 1.41
COL6A1-203ENST00000466285 MAP4K1Q92918 833 aa23.84■■□□□ 1.41
COL6A1-203ENST00000466285 INPP4AQ96PE3 977 aaPredicted RBP23.84■■□□□ 1.41
COL6A1-203ENST00000466285 MAP3K20Q9NYL2 800 aaKnown RBP23.84■■□□□ 1.41
COL6A1-203ENST00000466285 TREHO43280 583 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms