RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 BMP2KLQ5H9B9 411 aa26.32■■□□□ 1.8
PTPN4-207ENST00000460162 CELF3Q5SZQ8 465 aaKnown RBP26.32■■□□□ 1.8
PTPN4-207ENST00000460162 C7orf31Q8N865 590 aa26.32■■□□□ 1.8
PTPN4-207ENST00000460162 SEC63Q9UGP8 760 aaKnown RBP26.32■■□□□ 1.8
PTPN4-207ENST00000460162 GNAQP50148 359 aa26.31■■□□□ 1.8
PTPN4-207ENST00000460162 KIAA0753Q2KHM9 967 aa26.31■■□□□ 1.8
PTPN4-207ENST00000460162 TET1Q8NFU7 2136 aa26.31■■□□□ 1.8
PTPN4-207ENST00000460162 SPATA33Q96N06 139 aa26.31■■□□□ 1.8
PTPN4-207ENST00000460162 SLC9A7Q96T83 725 aa26.31■■□□□ 1.8
PTPN4-207ENST00000460162 PRDM12Q9H4Q4 367 aa26.31■■□□□ 1.8
PTPN4-207ENST00000460162 ANO2Q9NQ90 1003 aa26.31■■□□□ 1.8
PTPN4-207ENST00000460162 CHD7Q9P2D1 2997 aa26.31■■□□□ 1.8
PTPN4-207ENST00000460162 CCDC69A6NI79 296 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 PPFIA4O75335 1185 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 LIFRP42702 1097 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 NECTIN1Q15223 517 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 HSDL1Q3SXM5 330 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 CREB3L3Q68CJ9 461 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 NFXL1Q6ZNB6 911 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 CENPQQ7L2Z9 268 aaPredicted RBP26.3■■□□□ 1.8
PTPN4-207ENST00000460162 PIBF1Q8WXW3 757 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 HDAC6Q9UBN7 1215 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 MYO9BQ13459 2157 aa26.3■■□□□ 1.8
PTPN4-207ENST00000460162 BAIAP3O94812 1187 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 PARNO95453 639 aaKnown RBP26.29■■□□□ 1.8
PTPN4-207ENST00000460162 CALM1P0DP23 149 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 CALM2P0DP24 149 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 CALM3P0DP25 149 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 SELPP16109 830 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 RABGGTBP53611 331 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 PPP2R2DQ66LE6 453 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 LRRC8DQ7L1W4 858 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 DHX38Q92620 1227 aaKnown RBP26.29■■□□□ 1.8
PTPN4-207ENST00000460162 INPP4AQ96PE3 977 aaPredicted RBP26.29■■□□□ 1.8
PTPN4-207ENST00000460162 ALG1Q9BT22 464 aa26.29■■□□□ 1.8
PTPN4-207ENST00000460162 COL25A1Q9BXS0 654 aaPredicted RBP26.29■■□□□ 1.8
PTPN4-207ENST00000460162 FTOQ9C0B1 505 aaKnown RBP eCLIP26.29■■□□□ 1.8
PTPN4-207ENST00000460162 PIK3CDO00329 1044 aa26.28■■□□□ 1.8
PTPN4-207ENST00000460162 ICAM3P32942 547 aa26.28■■□□□ 1.8
PTPN4-207ENST00000460162 SP2Q02086 613 aa26.28■■□□□ 1.8
PTPN4-207ENST00000460162 SMARCC2Q8TAQ2 1214 aa26.28■■□□□ 1.8
PTPN4-207ENST00000460162 PHOSPHO2Q8TCD6 241 aa26.28■■□□□ 1.8
PTPN4-207ENST00000460162 CUL5Q93034 780 aa26.28■■□□□ 1.8
PTPN4-207ENST00000460162 MLXIPQ9HAP2 919 aa26.28■■□□□ 1.8
PTPN4-207ENST00000460162 PTPRSQ13332 1948 aa26.27■■□□□ 1.8
PTPN4-207ENST00000460162 PLEKHA8P1O95397 391 aa26.27■■□□□ 1.8
PTPN4-207ENST00000460162 MRPS9P82933 396 aaKnown RBP26.27■■□□□ 1.8
PTPN4-207ENST00000460162 PTK7Q13308 1070 aa26.27■■□□□ 1.8
PTPN4-207ENST00000460162 USP38Q8NB14 1042 aa26.27■■□□□ 1.8
PTPN4-207ENST00000460162 GPKOWQ92917 476 aaPredicted RBP eCLIP26.27■■□□□ 1.8
PTPN4-207ENST00000460162 DOCK5Q9H7D0 1870 aa26.27■■□□□ 1.8
PTPN4-207ENST00000460162 VCANP13611 3396 aa26.26■■□□□ 1.79
PTPN4-207ENST00000460162 FIBPO43427 364 aa26.26■■□□□ 1.79
PTPN4-207ENST00000460162 SORBS3O60504 671 aa26.26■■□□□ 1.79
PTPN4-207ENST00000460162 RNF20Q5VTR2 975 aa26.26■■□□□ 1.79
PTPN4-207ENST00000460162 ZFP91Q96JP5 570 aaPredicted RBP26.26■■□□□ 1.79
PTPN4-207ENST00000460162 SLC12A7Q9Y666 1083 aa26.26■■□□□ 1.79
PTPN4-207ENST00000460162 CKBP12277 381 aa26.25■■□□□ 1.79
PTPN4-207ENST00000460162 COL9A3Q14050 684 aaPredicted RBP26.25■■□□□ 1.79
PTPN4-207ENST00000460162 NEDD9Q14511 834 aa26.25■■□□□ 1.79
PTPN4-207ENST00000460162 XRRA1Q6P2D8 792 aa26.25■■□□□ 1.79
PTPN4-207ENST00000460162 SGMS1Q86VZ5 419 aa26.25■■□□□ 1.79
PTPN4-207ENST00000460162 SRBD1Q8N5C6 995 aaKnown RBP26.25■■□□□ 1.79
PTPN4-207ENST00000460162 C16orf70Q9BSU1 422 aa26.25■■□□□ 1.79
PTPN4-207ENST00000460162 SPATA31C2B4DYI2 1134 aa26.24■■□□□ 1.79
PTPN4-207ENST00000460162 NOP56O00567 594 aaKnown RBP26.24■■□□□ 1.79
PTPN4-207ENST00000460162 MEIS2O14770 477 aa26.24■■□□□ 1.79
PTPN4-207ENST00000460162 MYOGP15173 224 aa26.24■■□□□ 1.79
PTPN4-207ENST00000460162 RXRAP19793 462 aa26.24■■□□□ 1.79
PTPN4-207ENST00000460162 ADGRE1Q14246 886 aa26.24■■□□□ 1.79
PTPN4-207ENST00000460162 PCNX4Q63HM2 1172 aa26.24■■□□□ 1.79
PTPN4-207ENST00000460162 USP17L6PQ6QN14 398 aa26.24■■□□□ 1.79
PTPN4-207ENST00000460162 METTL7BQ6UX53 244 aa26.24■■□□□ 1.79
PTPN4-207ENST00000460162 CXCL10P02778 98 aa26.23■■□□□ 1.79
PTPN4-207ENST00000460162 LGALS2P05162 132 aa26.23■■□□□ 1.79
PTPN4-207ENST00000460162 TRIM71Q2Q1W2 868 aaKnown RBP26.23■■□□□ 1.79
PTPN4-207ENST00000460162 CA3P07451 260 aa26.22■■□□□ 1.79
PTPN4-207ENST00000460162 KCNJ6P48051 423 aa26.22■■□□□ 1.79
PTPN4-207ENST00000460162 SEMA3FQ13275 785 aa26.22■■□□□ 1.79
PTPN4-207ENST00000460162 GPNMBQ14956 572 aa26.22■■□□□ 1.79
PTPN4-207ENST00000460162 CNKSR3Q6P9H4 555 aa26.22■■□□□ 1.79
PTPN4-207ENST00000460162 TMTC3Q6ZXV5 915 aa26.22■■□□□ 1.79
PTPN4-207ENST00000460162 HERC6Q8IVU3 1022 aa26.22■■□□□ 1.79
PTPN4-207ENST00000460162 TRANK1O15050 2925 aa26.22■■□□□ 1.79
PTPN4-207ENST00000460162 H3BRB1 525 aa26.21■■□□□ 1.79
PTPN4-207ENST00000460162 NBNO60934 754 aa26.21■■□□□ 1.79
PTPN4-207ENST00000460162 HOXC8P31273 242 aa26.21■■□□□ 1.79
PTPN4-207ENST00000460162 WDR5P61964 334 aaKnown RBP26.21■■□□□ 1.79
PTPN4-207ENST00000460162 SERINC5Q86VE9 423 aa26.21■■□□□ 1.79
PTPN4-207ENST00000460162 MICU3Q86XE3 530 aa26.21■■□□□ 1.79
PTPN4-207ENST00000460162 CMTR1Q8N1G2 835 aaKnown RBP26.21■■□□□ 1.79
PTPN4-207ENST00000460162 SENP7Q9BQF6 1050 aa26.21■■□□□ 1.79
PTPN4-207ENST00000460162 USP26Q9BXU7 913 aa26.21■■□□□ 1.79
PTPN4-207ENST00000460162 LRRC2Q9BYS8 371 aa26.21■■□□□ 1.79
PTPN4-207ENST00000460162 TUT1Q9H6E5 874 aaKnown RBP26.21■■□□□ 1.79
PTPN4-207ENST00000460162 KIF28PB7ZC32 967 aa26.2■■□□□ 1.78
PTPN4-207ENST00000460162 TRAF7Q6Q0C0 670 aa26.2■■□□□ 1.78
PTPN4-207ENST00000460162 CYFIP1Q7L576 1253 aa26.2■■□□□ 1.78
PTPN4-207ENST00000460162 NLRX1Q86UT6 975 aa26.2■■□□□ 1.78
PTPN4-207ENST00000460162 SKAP1Q86WV1 359 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms