RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 PKD2L1Q9P0L9 805 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 FRMPD4Q14CM0 1322 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 KAT6AQ92794 2004 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 ZBBXA8MT70 800 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 GRXCR1A8MXD5 290 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 KPNA6O60684 536 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 CENPBP07199 599 aaPredicted RBP11.13□□□□□ -0.63
USP54-207ENST00000451492 HMGB1P09429 215 aaKnown RBP11.13□□□□□ -0.63
USP54-207ENST00000451492 SUPT20HL2P0C7V6 817 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 SMARCA1P28370 1054 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 PSEN2P49810 448 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 LAMC2Q13753 1193 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 MFSD10Q14728 455 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 PTGISQ16647 500 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 TSGA10IPQ3SY00 556 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 GNPTABQ3T906 1256 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 TMEM240Q5SV17 173 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 CELF3Q5SZQ8 465 aaKnown RBP11.13□□□□□ -0.63
USP54-207ENST00000451492 GDF6Q6KF10 455 aaPredicted RBP11.13□□□□□ -0.63
USP54-207ENST00000451492 NFRKBQ6P4R8 1299 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 PSRC1Q6PGN9 363 aaPredicted RBP11.13□□□□□ -0.63
USP54-207ENST00000451492 C16orf59Q7L2K0 433 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 CYFIP1Q7L576 1253 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 OTOP2Q7RTS6 562 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 PPTC7Q8NI37 304 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 KAT2BQ92831 832 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 IL23AQ9NPF7 189 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 CDH23Q9H251 3354 aa11.13□□□□□ -0.63
USP54-207ENST00000451492 SIP14410 1827 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 SPDYE3A6NKU9 549 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 NOP56O00567 594 aaKnown RBP11.12□□□□□ -0.63
USP54-207ENST00000451492 RPS6KB1P23443 525 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 ADD1P35611 737 aaKnown RBP11.12□□□□□ -0.63
USP54-207ENST00000451492 SEMA3FQ13275 785 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 KIAA0753Q2KHM9 967 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 MYSM1Q5VVJ2 828 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 TYW1BQ6NUM6 668 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 KCNV1Q6PIU1 500 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 C7orf31Q8N865 590 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 KATNAL1Q9BW62 490 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 SEZ6LQ9BYH1 1024 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 MTMR10Q9NXD2 777 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 HDAC6Q9UBN7 1215 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 TELO2Q9Y4R8 837 aa11.12□□□□□ -0.63
USP54-207ENST00000451492 V9GY48 417 aaPredicted RBP11.12□□□□□ -0.63
USP54-207ENST00000451492 TET1Q8NFU7 2136 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 STXBP3O00186 592 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 PIK3CDO00329 1044 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 FIBPO43427 364 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 FGBP02675 491 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 DNAJB2P25686 324 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 ADCY7P51828 1080 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 CCT2P78371 535 aaKnown RBP11.11□□□□□ -0.63
USP54-207ENST00000451492 SMAD3P84022 425 aaKnown RBP11.11□□□□□ -0.63
USP54-207ENST00000451492 ZNF200P98182 395 aaPredicted RBP11.11□□□□□ -0.63
USP54-207ENST00000451492 UTP14CQ5TAP6 766 aaKnown RBP11.11□□□□□ -0.63
USP54-207ENST00000451492 PCNX4Q63HM2 1172 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 GPR153Q6NV75 609 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 NLRX1Q86UT6 975 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 TRIM50Q86XT4 487 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 PHKBQ93100 1093 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 EMID1Q96A84 441 aaPredicted RBP11.11□□□□□ -0.63
USP54-207ENST00000451492 GUCD1Q96NT3 240 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 INPP4AQ96PE3 977 aaPredicted RBP11.11□□□□□ -0.63
USP54-207ENST00000451492 LARP6Q9BRS8 491 aaKnown RBP11.11□□□□□ -0.63
USP54-207ENST00000451492 TMEM260Q9NX78 707 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 CXXC1Q9P0U4 656 aaPredicted RBP11.11□□□□□ -0.63
USP54-207ENST00000451492 PCDHA6Q9UN73 950 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 PCDHA8Q9Y5H6 950 aa11.11□□□□□ -0.63
USP54-207ENST00000451492 LOXHD1Q8IVV2 1947 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 STAM2O75886 525 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 F2P00734 622 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 LGALS2P05162 132 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 PSMA5P28066 241 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 PBX2P40425 430 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 PTPN11Q06124 597 aaPredicted RBP11.1□□□□□ -0.63
USP54-207ENST00000451492 FUT2Q10981 343 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 CCDC155Q8N6L0 562 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 RETREG2Q8NC44 543 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 KCNB2Q92953 911 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 UPF3BQ9BZI7 483 aaKnown RBP11.1□□□□□ -0.63
USP54-207ENST00000451492 FTOQ9C0B1 505 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP54-207ENST00000451492 TTYH1Q9H313 450 aaPredicted RBP11.1□□□□□ -0.63
USP54-207ENST00000451492 EHMT1Q9H9B1 1298 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 NCOA5Q9HCD5 579 aaKnown RBP11.1□□□□□ -0.63
USP54-207ENST00000451492 FAM217BQ9NTX9 383 aaPredicted RBP11.1□□□□□ -0.63
USP54-207ENST00000451492 GTF2IRD1Q9UHL9 959 aa11.1□□□□□ -0.63
USP54-207ENST00000451492 WDR81Q562E7 1941 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 MICAL3Q7RTP6 2002 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 COL4A4P53420 1690 aaPredicted RBP11.09□□□□□ -0.63
USP54-207ENST00000451492 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.09□□□□□ -0.63
USP54-207ENST00000451492 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.09□□□□□ -0.63
USP54-207ENST00000451492 SMCO2A6NFE2 343 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 SPATA31C2B4DYI2 1134 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 TGFB3P10600 412 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 STK3Q13188 491 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 BFSP2Q13515 415 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 MTMR1Q13613 665 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 NEDD9Q14511 834 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 HIC1Q14526 733 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms