RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 NBNO60934 754 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 CKBP12277 381 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 SELPP16109 830 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 UBA1P22314 1058 aaKnown RBP13.41□□□□□ -0.26
USP4-204ENST00000416417 DEFB103AP81534 67 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 GHRHRQ02643 423 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 CELF3Q5SZQ8 465 aaKnown RBP13.41□□□□□ -0.26
USP4-204ENST00000416417 MYSM1Q5VVJ2 828 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 SESTD1Q86VW0 696 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 MB21D2Q8IYB1 491 aaPredicted RBP13.41□□□□□ -0.26
USP4-204ENST00000416417 CMTR1Q8N1G2 835 aaKnown RBP13.41□□□□□ -0.26
USP4-204ENST00000416417 IGDCC4Q8TDY8 1250 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 ARNTL2Q8WYA1 636 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 MAF1Q9H063 256 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 RTEL1Q9NZ71 1219 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 THEGQ9P2T0 379 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 PNMA6FA0A0J9YX94 578 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 HAS3O00219 553 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 F2P00734 622 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 RXRAP19793 462 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 CCND2P30279 289 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 WDR5P61964 334 aaKnown RBP13.4□□□□□ -0.26
USP4-204ENST00000416417 TAP1Q03518 808 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 ZNF618Q5T7W0 954 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 FAM117BQ6P1L5 589 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 CCDC155Q8N6L0 562 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 CAGE1Q8TC20 777 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 AFAP1L1Q8TED9 768 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 EMID1Q96A84 441 aaPredicted RBP13.4□□□□□ -0.26
USP4-204ENST00000416417 SLC9A7Q96T83 725 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 TET1Q8NFU7 2136 aa13.4□□□□□ -0.26
USP4-204ENST00000416417 MRPS9P82933 396 aaKnown RBP13.39□□□□□ -0.27
USP4-204ENST00000416417 TFF2Q03403 129 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 MBTPS1Q14703 1052 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 SKIV2LQ15477 1246 aaKnown RBP13.39□□□□□ -0.27
USP4-204ENST00000416417 TRIM71Q2Q1W2 868 aaKnown RBP13.39□□□□□ -0.27
USP4-204ENST00000416417 TRAF7Q6Q0C0 670 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 CATIPQ7Z7H3 387 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 SYMPKQ92797 1274 aaKnown RBP13.39□□□□□ -0.27
USP4-204ENST00000416417 MAP4K1Q92918 833 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 ASB2Q96Q27 587 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 OSBPL7Q9BZF2 842 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 MLXIPQ9HAP2 919 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 LY9Q9HBG7 655 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 TRIP12Q14669 1992 aaPredicted RBP13.39□□□□□ -0.27
USP4-204ENST00000416417 hCG_1642624A0A1W2PR95 340 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 TLL1O43897 1013 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 PLEKHA8P1O95397 391 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 KCNJ6P48051 423 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 SP4Q02446 784 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 SEMA3FQ13275 785 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 PTK7Q13308 1070 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 SART3Q15020 963 aaKnown RBP13.39□□□□□ -0.27
USP4-204ENST00000416417 USP17L6PQ6QN14 398 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 ZNF654Q8IZM8 581 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 PHOSPHO2Q8TCD6 241 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 NECAB3Q96P71 396 aaPredicted RBP13.39□□□□□ -0.27
USP4-204ENST00000416417 C16orf70Q9BSU1 422 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 KATNAL1Q9BW62 490 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 LRRC2Q9BYS8 371 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 MTCH2Q9Y6C9 303 aa13.39□□□□□ -0.27
USP4-204ENST00000416417 BAZ2BQ9UIF8 2168 aaKnown RBP13.38□□□□□ -0.27
USP4-204ENST00000416417 MYH7BA7E2Y1 1941 aa13.38□□□□□ -0.27
USP4-204ENST00000416417 PTPRSQ13332 1948 aa13.38□□□□□ -0.27
USP4-204ENST00000416417 PRC1O43663 620 aa13.38□□□□□ -0.27
USP4-204ENST00000416417 HOXD8P13378 290 aaPredicted RBP13.38□□□□□ -0.27
USP4-204ENST00000416417 CNKSR3Q6P9H4 555 aa13.38□□□□□ -0.27
USP4-204ENST00000416417 TRIM50Q86XT4 487 aa13.38□□□□□ -0.27
USP4-204ENST00000416417 ZBED2Q9BTP6 218 aa13.38□□□□□ -0.27
USP4-204ENST00000416417 MAP3K20Q9NYL2 800 aaKnown RBP13.38□□□□□ -0.27
USP4-204ENST00000416417 MTUS1Q9ULD2 1270 aa13.38□□□□□ -0.27
USP4-204ENST00000416417 KIF28PB7ZC32 967 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 PPFIA4O75335 1185 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 BAIAP3O94812 1187 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 CXCL10P02778 98 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 LGALS2P05162 132 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 THPOP40225 353 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 MRPS5P82675 430 aaKnown RBP13.37□□□□□ -0.27
USP4-204ENST00000416417 RBL2Q08999 1139 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 UTP14CQ5TAP6 766 aaKnown RBP13.37□□□□□ -0.27
USP4-204ENST00000416417 KCNV1Q6PIU1 500 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.37□□□□□ -0.27
USP4-204ENST00000416417 NFXL1Q6ZNB6 911 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 CYFIP1Q7L576 1253 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 CCDC82Q8N4S0 544 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 SRBD1Q8N5C6 995 aaKnown RBP13.37□□□□□ -0.27
USP4-204ENST00000416417 ADAMTS19Q8TE59 1207 aa13.37□□□□□ -0.27
USP4-204ENST00000416417 ATXN2LQ8WWM7 1075 aaKnown RBP13.37□□□□□ -0.27
USP4-204ENST00000416417 LSG1Q9H089 658 aaKnown RBP13.37□□□□□ -0.27
USP4-204ENST00000416417 XIRP2A4UGR9 3374 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 TNFRSF10AO00220 468 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 SLC27A2O14975 620 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 TREHO43280 583 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 CTSHP09668 335 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 SMIM10L2AP0DMW4 78 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 SMIM10L2BP0DMW5 78 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 KCNQ1P51787 676 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 GRB10Q13322 594 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 MYO9BQ13459 2157 aa13.36□□□□□ -0.27
USP4-204ENST00000416417 CASC1Q6TDU7 716 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms