RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 MYSM1Q5VVJ2 828 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 RAB11FIP4Q86YS3 637 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 SMARCC2Q8TAQ2 1214 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 CAGE1Q8TC20 777 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 GPKOWQ92917 476 aaPredicted RBP eCLIP25.77■■□□□ 1.721e-10■■□□□ 11.7
MSH6-202ENST00000411819 CUL5Q93034 780 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 LZTS2Q9BRK4 669 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 LRRC2Q9BYS8 371 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 PRDM12Q9H4Q4 367 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 HDAC6Q9UBN7 1215 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 GTF2IRD1Q9UHL9 959 aa25.77■■□□□ 1.72
MSH6-202ENST00000411819 YBX2Q9Y2T7 364 aaKnown RBP25.77■■□□□ 1.72
MSH6-202ENST00000411819 UNC80Q8N2C7 3258 aa25.76■■□□□ 1.72
MSH6-202ENST00000411819 EYSQ5T1H1 3165 aa25.76■■□□□ 1.71
MSH6-202ENST00000411819 GNAQP50148 359 aa25.76■■□□□ 1.71
MSH6-202ENST00000411819 NECTIN1Q15223 517 aa25.76■■□□□ 1.71
MSH6-202ENST00000411819 HSDL1Q3SXM5 330 aa25.76■■□□□ 1.71
MSH6-202ENST00000411819 GNPTABQ3T906 1256 aa25.76■■□□□ 1.71
MSH6-202ENST00000411819 MLXIPQ9HAP2 919 aa25.76■■□□□ 1.71
MSH6-202ENST00000411819 DOCK5Q9H7D0 1870 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 FRMPD4Q14CM0 1322 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 CALM1P0DP23 149 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 CALM2P0DP24 149 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 CALM3P0DP25 149 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 TGFB3P10600 412 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 SP2Q02086 613 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 CMTR1Q8N1G2 835 aaKnown RBP25.75■■□□□ 1.71
MSH6-202ENST00000411819 AFAP1L1Q8TED9 768 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 CTAGE1Q96RT6 745 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 SLC12A7Q9Y666 1083 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 TET1Q8NFU7 2136 aa25.75■■□□□ 1.71
MSH6-202ENST00000411819 SMARCA1P28370 1054 aa25.74■■□□□ 1.71
MSH6-202ENST00000411819 LIFRP42702 1097 aa25.74■■□□□ 1.71
MSH6-202ENST00000411819 RNF20Q5VTR2 975 aa25.74■■□□□ 1.71
MSH6-202ENST00000411819 PPP2R2DQ66LE6 453 aa25.74■■□□□ 1.71
MSH6-202ENST00000411819 USP17L6PQ6QN14 398 aa25.74■■□□□ 1.71
MSH6-202ENST00000411819 SRBD1Q8N5C6 995 aaKnown RBP25.74■■□□□ 1.71
MSH6-202ENST00000411819 HAS3O00219 553 aa25.73■■□□□ 1.71
MSH6-202ENST00000411819 PPFIA4O75335 1185 aa25.73■■□□□ 1.71
MSH6-202ENST00000411819 HOXD8P13378 290 aaPredicted RBP25.73■■□□□ 1.71
MSH6-202ENST00000411819 MYOGP15173 224 aa25.73■■□□□ 1.71
MSH6-202ENST00000411819 MRPS9P82933 396 aaKnown RBP25.73■■□□□ 1.71
MSH6-202ENST00000411819 LRRC8DQ7L1W4 858 aa25.73■■□□□ 1.71
MSH6-202ENST00000411819 MICU3Q86XE3 530 aa25.73■■□□□ 1.71
MSH6-202ENST00000411819 DHX38Q92620 1227 aaKnown RBP25.73■■□□□ 1.71
MSH6-202ENST00000411819 RTEL1Q9NZ71 1219 aa25.73■■□□□ 1.71
MSH6-202ENST00000411819 PCDHA11Q9Y5I1 949 aa25.73■■□□□ 1.71
MSH6-202ENST00000411819 NOP56O00567 594 aaKnown RBP25.72■■□□□ 1.71
MSH6-202ENST00000411819 STAM2O75886 525 aa25.72■■□□□ 1.71
MSH6-202ENST00000411819 SELPP16109 830 aa25.72■■□□□ 1.71
MSH6-202ENST00000411819 CCDC82Q8N4S0 544 aa25.72■■□□□ 1.71
MSH6-202ENST00000411819 INPP4AQ96PE3 977 aaPredicted RBP25.72■■□□□ 1.71
MSH6-202ENST00000411819 SLC9A7Q96T83 725 aa25.72■■□□□ 1.71
MSH6-202ENST00000411819 CUL9Q8IWT3 2517 aa25.71■■□□□ 1.71
MSH6-202ENST00000411819 PPM1EQ8WY54 764 aa25.71■■□□□ 1.71
MSH6-202ENST00000411819 A0A0C4DFX4 3053 aa25.71■■□□□ 1.71
MSH6-202ENST00000411819 hCG_1642624A0A1W2PR95 340 aa25.7■■□□□ 1.7
MSH6-202ENST00000411819 FIBPO43427 364 aa25.7■■□□□ 1.7
MSH6-202ENST00000411819 CKBP12277 381 aa25.7■■□□□ 1.7
MSH6-202ENST00000411819 SYNE3Q6ZMZ3 975 aa25.7■■□□□ 1.7
MSH6-202ENST00000411819 USP38Q8NB14 1042 aa25.7■■□□□ 1.7
MSH6-202ENST00000411819 COL25A1Q9BXS0 654 aaPredicted RBP25.7■■□□□ 1.7
MSH6-202ENST00000411819 PIK3CDO00329 1044 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 MEIS2O14770 477 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 CDC45O75419 566 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 IGFBP4P22692 258 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 ICAM3P32942 547 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 KCNJ6P48051 423 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 ZNF200P98182 395 aaPredicted RBP25.69■■□□□ 1.7
MSH6-202ENST00000411819 RBL2Q08999 1139 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 PTK7Q13308 1070 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 NEDD9Q14511 834 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 PCNX4Q63HM2 1172 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 TMTC3Q6ZXV5 915 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 CYFIP1Q7L576 1253 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 NEK1Q96PY6 1258 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 C16orf70Q9BSU1 422 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 BCAS3Q9H6U6 928 aa25.69■■□□□ 1.7
MSH6-202ENST00000411819 BAIAP3O94812 1187 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 LGALS2P05162 132 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 SP4Q02446 784 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 SEMA3FQ13275 785 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 METTL7BQ6UX53 244 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 SGMS1Q86VZ5 419 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 FANCBQ8NB91 859 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 TCEANC2Q96MN5 208 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 PSTPIP2Q9H939 334 aa25.68■■□□□ 1.7
MSH6-202ENST00000411819 PTPRSQ13332 1948 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 SPATA31C2B4DYI2 1134 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 H3BRB1 525 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 PARNO95453 639 aaKnown RBP25.67■■□□□ 1.7
MSH6-202ENST00000411819 CA3P07451 260 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 ADGRE1Q14246 886 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 XRRA1Q6P2D8 792 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 HEATR3Q7Z4Q2 680 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 NLRX1Q86UT6 975 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 WNT8BQ93098 351 aa25.67■■□□□ 1.7
MSH6-202ENST00000411819 TUT1Q9H6E5 874 aaKnown RBP25.67■■□□□ 1.7
MSH6-202ENST00000411819 C17orf102A2RUQ5 167 aa25.66■■□□□ 1.7
MSH6-202ENST00000411819 UBE2SQ16763 222 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms