RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TMEM260Q9NX78 707 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 DDX20Q9UHI6 824 aaKnown RBP8□□□□□ -1.13
LIMA1-202ENST00000394943 IGSF9BQ9UPX0 1349 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 STX6O43752 255 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 GJB1P08034 283 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 AKR1A1P14550 325 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 ZNF746Q6NUN9 644 aaPredicted RBP8□□□□□ -1.13
LIMA1-202ENST00000394943 RPAINQ86UA6 219 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 IGSF22Q8N9C0 903 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 SCFD2Q8WU76 684 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 MCOLN1Q9GZU1 580 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 VAT1LQ9HCJ6 419 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 CTDP1Q9Y5B0 961 aaPredicted RBP8□□□□□ -1.13
LIMA1-202ENST00000394943 FARP2O94887 1054 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-202ENST00000394943 INHAP05111 366 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 PGK2P07205 417 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 ZSCAN22P10073 491 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-202ENST00000394943 NLRP5P59047 1200 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 ADAM17P78536 824 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 IKQ13123 557 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-202ENST00000394943 PDIA5Q14554 519 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 UBE2SQ16763 222 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 HOMER1Q86YM7 354 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 ZNF579Q8NAF0 562 aaKnown RBP7.99□□□□□ -1.13
LIMA1-202ENST00000394943 BRMS1Q9HCU9 246 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 RTEL1Q9NZ71 1219 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 FAM184BQ9ULE4 1060 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 BAZ2BQ9UIF8 2168 aaKnown RBP7.99□□□□□ -1.13
LIMA1-202ENST00000394943 ARIH2O95376 493 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 SMPD1P17405 629 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 SP2Q02086 613 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 ECM1Q16610 540 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 CNNM4Q6P4Q7 775 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 NLRX1Q86UT6 975 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 TBCKQ8TEA7 893 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 TBC1D22BQ9NU19 505 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 KCNJ14Q9UNX9 436 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 COL1A2P08123 1366 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 BTBD18B2RXH4 712 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 WNT7AO00755 349 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 PPP6R2O75170 966 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 ARHGEF16Q5VV41 709 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 MYSM1Q5VVJ2 828 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 METTL7BQ6UX53 244 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 SMAP1Q8IYB5 467 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-202ENST00000394943 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.99□□□□□ -1.13
LIMA1-202ENST00000394943 TRIM17Q9Y577 477 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 ELP1O95163 1332 aa7.99□□□□□ -1.13
LIMA1-202ENST00000394943 hCG_1642624A0A1W2PR95 340 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 MOXD2PA6NHM9 499 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 SPDYE3A6NKU9 549 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 DNM1LO00429 736 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 F13A1P00488 732 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 CDK7P50613 346 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 ITGB3BPQ13352 177 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 LAMC2Q13753 1193 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 ABHD15Q6UXT9 468 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 PLPPR4Q7Z2D5 763 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 ELOA2Q8IYF1 753 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 LINC01465Q8N7H1 131 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 NEK9Q8TD19 979 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 MAFBQ9Y5Q3 323 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 SYNRGQ9UMZ2 1314 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 MSH4O15457 936 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 YEATS4O95619 227 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 CFBP00751 764 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 UBXN2AP68543 259 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 NR5A1Q13285 461 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 NEDD9Q14511 834 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 PLS1Q14651 629 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 DPP9Q86TI2 863 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 SLFN12Q8IYM2 578 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 DDX11Q96FC9 970 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 PURBQ96QR8 312 aaKnown RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 BIN2Q9UBW5 565 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 CABYRO75952 493 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 UBA1P22314 1058 aaKnown RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 HOXA13P31271 388 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 SLC26A2P50443 739 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 GNPTABQ3T906 1256 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 LARP1BQ659C4 914 aaKnown RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 GPR20Q99678 358 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 GJB4Q9NTQ9 266 aa7.98□□□□□ -1.13
LIMA1-202ENST00000394943 RBM19Q9Y4C8 960 aaKnown RBP7.98□□□□□ -1.13
LIMA1-202ENST00000394943 CCND3P30281 292 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-202ENST00000394943 PDE4DQ08499 809 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 TRIM32Q13049 653 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 TTLL4Q14679 1199 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 KCNH7Q9NS40 1196 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 RCOR1Q9UKL0 485 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 HTTP42858 3142 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 SLC37A4O43826 429 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 SGPL1O95470 568 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 F2P00734 622 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 XRCC6P12956 609 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIMA1-202ENST00000394943 CCL5P13501 91 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 SFNP31947 248 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 NUCB2P80303 420 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 TRIM29Q14134 588 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 IL17AQ16552 155 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms