RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 GJD3Q8N144 294 aa16.44■□□□□ 0.22
PTCH1-202ENST00000375271 EMID1Q96A84 441 aaPredicted RBP16.44■□□□□ 0.22
PTCH1-202ENST00000375271 SAMD11Q96NU1 681 aa16.44■□□□□ 0.22
PTCH1-202ENST00000375271 YME1L1Q96TA2 773 aa16.44■□□□□ 0.22
PTCH1-202ENST00000375271 AMNQ9BXJ7 453 aa16.44■□□□□ 0.22
PTCH1-202ENST00000375271 PXMP2Q9NR77 195 aa16.44■□□□□ 0.22
PTCH1-202ENST00000375271 DIAPH3Q9NSV4 1193 aa16.44■□□□□ 0.22
PTCH1-202ENST00000375271 DDX41Q9UJV9 622 aaKnown RBP16.44■□□□□ 0.22
PTCH1-202ENST00000375271 PTPRSQ13332 1948 aa16.44■□□□□ 0.22
PTCH1-202ENST00000375271 RSPH10B2B2RC85 870 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 SORBS3O60504 671 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 RSPH10BP0C881 870 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 ALADP13716 330 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 LEXMQ3ZCV2 418 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 PTCRAQ6ISU1 281 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-202ENST00000375271 SEPT8Q92599 483 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 TBC1D5Q92609 795 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 ZSCAN10Q96SZ4 725 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-202ENST00000375271 MLXIPQ9HAP2 919 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 SALL3Q9BXA9 1300 aa16.43■□□□□ 0.22
PTCH1-202ENST00000375271 C17orf102A2RUQ5 167 aa16.42■□□□□ 0.22
PTCH1-202ENST00000375271 NOP56O00567 594 aaKnown RBP16.42■□□□□ 0.22
PTCH1-202ENST00000375271 PPFIA4O75335 1185 aa16.42■□□□□ 0.22
PTCH1-202ENST00000375271 GGPS1O95749 300 aa16.42■□□□□ 0.22
PTCH1-202ENST00000375271 IMMTQ16891 758 aaKnown RBP16.42■□□□□ 0.22
PTCH1-202ENST00000375271 IFIT1BQ5T764 474 aaKnown RBP16.42■□□□□ 0.22
PTCH1-202ENST00000375271 ATP6V0A1Q93050 837 aa16.42■□□□□ 0.22
PTCH1-202ENST00000375271 KRT23Q9C075 422 aa16.42■□□□□ 0.22
PTCH1-202ENST00000375271 CNNM2Q9H8M5 875 aa16.42■□□□□ 0.22
PTCH1-202ENST00000375271 COL20A1Q9P218 1284 aa16.42■□□□□ 0.22
PTCH1-202ENST00000375271 MYH7BA7E2Y1 1941 aa16.41■□□□□ 0.22
PTCH1-202ENST00000375271 B4E1Z4 1266 aa16.41■□□□□ 0.22
PTCH1-202ENST00000375271 PI4K2BG5E9Z4 385 aa16.41■□□□□ 0.22
PTCH1-202ENST00000375271 CCND2P30279 289 aa16.41■□□□□ 0.22
PTCH1-202ENST00000375271 MRPL38Q96DV4 380 aaKnown RBP16.41■□□□□ 0.22
PTCH1-202ENST00000375271 CTAGE1Q96RT6 745 aa16.41■□□□□ 0.22
PTCH1-202ENST00000375271 C17orf80Q9BSJ5 609 aa16.41■□□□□ 0.22
PTCH1-202ENST00000375271 MAP3K20Q9NYL2 800 aaKnown RBP16.41■□□□□ 0.22
PTCH1-202ENST00000375271 PRR33A8MZF0 331 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 HIP1O00291 1037 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 UPP2O95045 317 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 GNAT1P11488 350 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 ZNF200P98182 395 aaPredicted RBP16.4■□□□□ 0.22
PTCH1-202ENST00000375271 GPNMBQ14956 572 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 GNPTABQ3T906 1256 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 CELF3Q5SZQ8 465 aaKnown RBP16.4■□□□□ 0.22
PTCH1-202ENST00000375271 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.4■□□□□ 0.22
PTCH1-202ENST00000375271 FAM178BQ8IXR5 827 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 DBF4BQ8NFT6 615 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 LNPKQ9C0E8 428 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 JMJD4Q9H9V9 463 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 PCDHA1Q9Y5I3 950 aa16.4■□□□□ 0.22
PTCH1-202ENST00000375271 HAS3O00219 553 aa16.39■□□□□ 0.21
PTCH1-202ENST00000375271 TGFB3P10600 412 aa16.39■□□□□ 0.21
PTCH1-202ENST00000375271 SDSP20132 328 aa16.39■□□□□ 0.21
PTCH1-202ENST00000375271 GPM6BQ13491 265 aa16.39■□□□□ 0.21
PTCH1-202ENST00000375271 CWC27Q6UX04 472 aaKnown RBP16.39■□□□□ 0.21
PTCH1-202ENST00000375271 HOMER1Q86YM7 354 aa16.39■□□□□ 0.21
PTCH1-202ENST00000375271 ENAHQ8N8S7 591 aaPredicted RBP16.39■□□□□ 0.21
PTCH1-202ENST00000375271 PDCD2LQ9BRP1 358 aa16.39■□□□□ 0.21
PTCH1-202ENST00000375271 ZNF215Q9UL58 517 aaPredicted RBP16.39■□□□□ 0.21
PTCH1-202ENST00000375271 LAMA4Q16363 1823 aa16.39■□□□□ 0.21
PTCH1-202ENST00000375271 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-202ENST00000375271 KLRF2D3W0D1 207 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 H3BQ06 376 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-202ENST00000375271 GCOM1H8Y6P7 765 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-202ENST00000375271 CAND2O75155 1236 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 CTSHP09668 335 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 POLR2MP0CAP2 368 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 IL9P15248 144 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 HOXA13P31271 388 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-202ENST00000375271 HSD17B4P51659 736 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 TRDNQ13061 729 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 TRIM71Q2Q1W2 868 aaKnown RBP16.38■□□□□ 0.21
PTCH1-202ENST00000375271 HSDL1Q3SXM5 330 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 EPC2Q52LR7 807 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 MYSM1Q5VVJ2 828 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 SERINC5Q86VE9 423 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 FCHSD1Q86WN1 690 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 SAMD3Q8N6K7 520 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 BANK1Q8NDB2 785 aa16.38■□□□□ 0.21
PTCH1-202ENST00000375271 IFIH1Q9BYX4 1025 aaKnown RBP16.38■□□□□ 0.21
PTCH1-202ENST00000375271 MICAL3Q7RTP6 2002 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 ERICH2A1L162 156 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 H3BRB1 525 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 ZBTB5O15062 677 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 UBA1P22314 1058 aaKnown RBP16.37■□□□□ 0.21
PTCH1-202ENST00000375271 RRP1P56182 461 aaKnown RBP16.37■□□□□ 0.21
PTCH1-202ENST00000375271 HDAC1Q13547 482 aaPredicted RBP16.37■□□□□ 0.21
PTCH1-202ENST00000375271 PGM5Q15124 567 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 TCTN1Q2MV58 587 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.37■□□□□ 0.21
PTCH1-202ENST00000375271 ANKS1AQ92625 1134 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 APBB2Q92870 758 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 KHSRPQ92945 711 aaKnown RBP eCLIP16.37■□□□□ 0.21
PTCH1-202ENST00000375271 WNT8BQ93098 351 aa16.37■□□□□ 0.21
PTCH1-202ENST00000375271 UPF3BQ9BZI7 483 aaKnown RBP16.37■□□□□ 0.21
PTCH1-202ENST00000375271 NSUN3Q9H649 340 aaKnown RBP16.37■□□□□ 0.21
PTCH1-202ENST00000375271 TUT1Q9H6E5 874 aaKnown RBP16.37■□□□□ 0.21
PTCH1-202ENST00000375271 DCXO43602 365 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms