RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	SCM3	Q12334	223 aa		3.37	□□□□□ -1.87
CUP9	YPL177C	YIM1	P28625	365 aa		3.36	□□□□□ -1.87
CUP9	YPL177C	MFT1	P33441	392 aa	Known RBP	3.36	□□□□□ -1.87
CUP9	YPL177C	TUL1	P36096	758 aa		3.36	□□□□□ -1.87
CUP9	YPL177C	ALG8	P40351	577 aa		3.36	□□□□□ -1.87
CUP9	YPL177C	ELP2	P42935	788 aa		3.36	□□□□□ -1.87
CUP9	YPL177C	WSC2	P53832	503 aa		3.36	□□□□□ -1.87
CUP9	YPL177C	PPT2	Q12036	173 aa		3.36	□□□□□ -1.87
CUP9	YPL177C	CYB2	P00175	591 aa		3.35	□□□□□ -1.87
CUP9	YPL177C	LEU4	P06208	619 aa	Known RBP	3.35	□□□□□ -1.87
CUP9	YPL177C	RHO2	P06781	192 aa		3.35	□□□□□ -1.87
CUP9	YPL177C	NPL6	P32832	435 aa		3.35	□□□□□ -1.87
CUP9	YPL177C	NOC2	P39744	710 aa	Known RBP	3.35	□□□□□ -1.87
CUP9	YPL177C	ISC1	P40015	477 aa	Known RBP	3.35	□□□□□ -1.87
CUP9	YPL177C	LSM5	P40089	93 aa	Known RBP	3.35	□□□□□ -1.87
CUP9	YPL177C	DLD2	P46681	530 aa	Known RBP	3.35	□□□□□ -1.87
CUP9	YPL177C	MNP1	P53163	194 aa	Predicted RBP	3.35	□□□□□ -1.87
CUP9	YPL177C	ARK1	P53974	638 aa		3.35	□□□□□ -1.87
CUP9	YPL177C	RSA1	Q08932	381 aa		3.35	□□□□□ -1.87
CUP9	YPL177C	CTF3	Q12748	733 aa		3.35	□□□□□ -1.87
CUP9	YPL177C	SPS4	P09937	338 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	CLB3	P24870	427 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	RSM22	P36056	628 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	BYE1	P36106	594 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	CBP4	P37267	147 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	URB2	P47108	1174 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	AVT4	P50944	713 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	RMD9	P53140	646 aa	Known RBP	3.34	□□□□□ -1.87
CUP9	YPL177C	ARX1	Q03862	593 aa	Known RBP	3.34	□□□□□ -1.87
CUP9	YPL177C	VTA1	Q06263	330 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	SFI1	Q12369	946 aa		3.34	□□□□□ -1.87
CUP9	YPL177C	ATR1	P13090	542 aa		3.33	□□□□□ -1.88
CUP9	YPL177C	PUT3	P25502	979 aa	Predicted RBP	3.33	□□□□□ -1.88
CUP9	YPL177C	RML2	P32611	393 aa		3.33	□□□□□ -1.88
CUP9	YPL177C	NIP100	P33420	868 aa		3.33	□□□□□ -1.88
CUP9	YPL177C	YHR218W	P38899	603 aa		3.33	□□□□□ -1.88
CUP9	YPL177C	GCD10	P41814	478 aa		3.33	□□□□□ -1.88
CUP9	YPL177C	TFG2	P41896	400 aa	Predicted RBP	3.33	□□□□□ -1.88
CUP9	YPL177C	VTC2	P43585	828 aa		3.33	□□□□□ -1.88
CUP9	YPL177C	PIR3	Q03180	325 aa		3.33	□□□□□ -1.88
CUP9	YPL177C	YRF1-4	O13559	1382 aa		3.33	□□□□□ -1.88
CUP9	YPL177C	RNA14	P25298	677 aa	Known RBP	3.32	□□□□□ -1.88
CUP9	YPL177C	NFU1	P32860	256 aa		3.32	□□□□□ -1.88
CUP9	YPL177C	HCS1	P34243	683 aa		3.32	□□□□□ -1.88
CUP9	YPL177C	CCT2	P39076	527 aa	Known RBP	3.32	□□□□□ -1.88
CUP9	YPL177C	TRS85	P46944	698 aa		3.32	□□□□□ -1.88
CUP9	YPL177C	SOV1	Q04748	898 aa		3.32	□□□□□ -1.88
CUP9	YPL177C	ISN1	Q99312	450 aa		3.32	□□□□□ -1.88
CUP9	YPL177C	YLR278C	Q05854	1341 aa		3.32	□□□□□ -1.88
CUP9	YPL177C	YCR100C	P25606	316 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	NDI1	P32340	513 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	PRP21	P32524	280 aa	Predicted RBP	3.31	□□□□□ -1.88
CUP9	YPL177C	GLC7	P32598	312 aa	Known RBP	3.31	□□□□□ -1.88
CUP9	YPL177C	MPE1	P35728	441 aa	Known RBP	3.31	□□□□□ -1.88
CUP9	YPL177C	YCR041W	P37265	110 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	VHC1	P38329	1120 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	PCA1	P38360	1216 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	ART5	P53244	586 aa	Known RBP	3.31	□□□□□ -1.88
CUP9	YPL177C	PCP1	P53259	346 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	YIF1	P53845	314 aa	Known RBP	3.31	□□□□□ -1.88
CUP9	YPL177C	NCS2	P53923	493 aa	Predicted RBP	3.31	□□□□□ -1.88
CUP9	YPL177C	GIR2	Q03768	265 aa	Predicted RBP	3.31	□□□□□ -1.88
CUP9	YPL177C	SPC19	Q03954	165 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	YDR387C	Q04162	555 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	TLG2	Q08144	397 aa		3.31	□□□□□ -1.88
CUP9	YPL177C	GPH1	P06738	902 aa	Known RBP	3.3	□□□□□ -1.88
CUP9	YPL177C	CHS1	P08004	1131 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	RIP1	P08067	215 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	YAR066W	P0CX18	203 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	YHR214W	P0CX19	203 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	GYP6	P32806	458 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	IDP2	P41939	412 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	RRT5	P43607	289 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	POP6	P53218	158 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	YCL021W-A	Q96VH3	125 aa		3.3	□□□□□ -1.88
CUP9	YPL177C	CPR1	P14832	162 aa	Known RBP	3.29	□□□□□ -1.88
CUP9	YPL177C	YCR051W	P25631	222 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	REC114	P32841	428 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	YME2	P32843	850 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	STB6	P36085	766 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	ARA1	P38115	344 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	TIF5	P38431	405 aa	Known RBP	3.29	□□□□□ -1.88
CUP9	YPL177C	SAS2	P40963	338 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	SSU1	P41930	458 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	FMS1	P50264	508 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	OGG1	P53397	376 aa	Predicted RBP	3.29	□□□□□ -1.88
CUP9	YPL177C	DSL1	P53847	754 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	BNI5	P53890	448 aa	Known RBP	3.29	□□□□□ -1.88
CUP9	YPL177C	PNG1	Q02890	363 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	HSP31	Q04432	237 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	ROY1	Q04847	553 aa		3.29	□□□□□ -1.88
CUP9	YPL177C	HIP1	P06775	603 aa		3.28	□□□□□ -1.88
CUP9	YPL177C	SAM1	P10659	382 aa	Known RBP	3.28	□□□□□ -1.88
CUP9	YPL177C	SEC63	P14906	663 aa		3.28	□□□□□ -1.88
CUP9	YPL177C	SAM2	P19358	384 aa	Known RBP	3.28	□□□□□ -1.88
CUP9	YPL177C	RPI1	P23250	407 aa	Known RBP	3.28	□□□□□ -1.88
CUP9	YPL177C	SNT1	P25357	1226 aa		3.28	□□□□□ -1.88
CUP9	YPL177C	RPC53	P25441	422 aa		3.28	□□□□□ -1.88
CUP9	YPL177C	CPR3	P25719	182 aa		3.28	□□□□□ -1.88
CUP9	YPL177C	APE2	P32454	952 aa	Known RBP	3.28	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms