RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YHR045WP38775 560 aa5.79□□□□□ -1.48
DEF1YKL054C CTH1P47976 325 aa5.79□□□□□ -1.48
DEF1YKL054C ASN2P49090 572 aaKnown RBP5.79□□□□□ -1.48
DEF1YKL054C HEF3P53978 1044 aaKnown RBP5.79□□□□□ -1.48
DEF1YKL054C RTN1Q04947 295 aaKnown RBP5.79□□□□□ -1.48
DEF1YKL054C RNR2P09938 399 aaKnown RBP5.79□□□□□ -1.48
DEF1YKL054C RRP1P35178 278 aaPredicted RBP5.79□□□□□ -1.48
DEF1YKL054C STN1P38960 494 aa5.79□□□□□ -1.48
DEF1YKL054C YGL108CP53139 140 aa5.79□□□□□ -1.48
DEF1YKL054C YDR541CQ03049 344 aa5.79□□□□□ -1.48
DEF1YKL054C AFT2Q08957 416 aa5.79□□□□□ -1.48
DEF1YKL054C LPX1Q12405 387 aaKnown RBP5.79□□□□□ -1.48
DEF1YKL054C DCP1Q12517 231 aaPredicted RBP5.79□□□□□ -1.48
DEF1YKL054C RRP12Q12754 1228 aaKnown RBP5.79□□□□□ -1.48
DEF1YKL054C CYC7P00045 113 aa5.78□□□□□ -1.48
DEF1YKL054C FUS3P16892 353 aaKnown RBP5.78□□□□□ -1.48
DEF1YKL054C PSO2P30620 661 aa5.78□□□□□ -1.48
DEF1YKL054C ARA1P38115 344 aa5.78□□□□□ -1.48
DEF1YKL054C PHM8P40025 321 aa5.78□□□□□ -1.48
DEF1YKL054C YFR020WP43600 232 aa5.78□□□□□ -1.48
DEF1YKL054C ATG27P46989 271 aa5.78□□□□□ -1.48
DEF1YKL054C UBX6P47049 396 aa5.78□□□□□ -1.48
DEF1YKL054C ROG1P53118 685 aa5.78□□□□□ -1.48
DEF1YKL054C SSY1Q03770 852 aa5.78□□□□□ -1.48
DEF1YKL054C APC4Q04601 652 aa5.78□□□□□ -1.48
DEF1YKL054C FMP16Q12497 93 aa5.78□□□□□ -1.48
DEF1YKL054C SRN2Q99176 213 aa5.78□□□□□ -1.48
DEF1YKL054C PMR1P13586 950 aa5.78□□□□□ -1.48
DEF1YKL054C ABF1P14164 731 aa5.78□□□□□ -1.48
DEF1YKL054C KRE2P27809 442 aa5.78□□□□□ -1.48
DEF1YKL054C TCD1P38756 429 aa5.78□□□□□ -1.48
DEF1YKL054C END3P39013 349 aa5.78□□□□□ -1.48
DEF1YKL054C PIG2P40187 538 aa5.78□□□□□ -1.48
DEF1YKL054C YPR078CQ06813 372 aa5.78□□□□□ -1.48
DEF1YKL054C NCE102Q12207 173 aaRIP-Chip data5.78□□□□□ -1.48not detected
DEF1YKL054C TRM13Q12383 476 aa5.78□□□□□ -1.48
DEF1YKL054C PAA1Q12447 191 aaKnown RBP5.78□□□□□ -1.48
DEF1YKL054C PMA1P05030 918 aaKnown RBP5.77□□□□□ -1.49
DEF1YKL054C PET111P08468 800 aa5.77□□□□□ -1.49
DEF1YKL054C SPS4P09937 338 aa5.77□□□□□ -1.49
DEF1YKL054C ADY2P25613 283 aa5.77□□□□□ -1.49
DEF1YKL054C YUR1P26725 428 aa5.77□□□□□ -1.49
DEF1YKL054C RAD14P28519 371 aa5.77□□□□□ -1.49
DEF1YKL054C BMH2P34730 273 aaKnown RBP5.77□□□□□ -1.49
DEF1YKL054C DUG2P38149 878 aa5.77□□□□□ -1.49
DEF1YKL054C CTP1P38152 299 aa5.77□□□□□ -1.49
DEF1YKL054C SLX1P38324 304 aa5.77□□□□□ -1.49
DEF1YKL054C YHR122WP38829 231 aa5.77□□□□□ -1.49
DEF1YKL054C RCY1P39531 840 aa5.77□□□□□ -1.49
DEF1YKL054C ATM1P40416 690 aa5.77□□□□□ -1.49
DEF1YKL054C TAX4P47030 604 aa5.77□□□□□ -1.49
DEF1YKL054C YGL114WP53134 725 aa5.77□□□□□ -1.49
DEF1YKL054C RDR1Q08904 546 aa5.77□□□□□ -1.49
DEF1YKL054C NPC2Q12408 173 aa5.77□□□□□ -1.49
DEF1YKL054C CNA1P23287 553 aa5.76□□□□□ -1.49
DEF1YKL054C RVS161P25343 265 aaKnown RBP5.76□□□□□ -1.49
DEF1YKL054C PTC6P25646 442 aa5.76□□□□□ -1.49
DEF1YKL054C SIN4P32259 974 aa5.76□□□□□ -1.49
DEF1YKL054C MEI5P32489 222 aa5.76□□□□□ -1.49
DEF1YKL054C FRE1P32791 686 aa5.76□□□□□ -1.49
DEF1YKL054C IMP3P32899 183 aaPredicted RBP5.76□□□□□ -1.49
DEF1YKL054C CUE2P36075 443 aaKnown RBP5.76□□□□□ -1.49
DEF1YKL054C IML3P38265 245 aa5.76□□□□□ -1.49
DEF1YKL054C SBE22P38814 852 aa5.76□□□□□ -1.49
DEF1YKL054C YHR177WP38867 453 aa5.76□□□□□ -1.49
DEF1YKL054C FMP33P46998 180 aa5.76□□□□□ -1.49
DEF1YKL054C YGR127WP53275 312 aa5.76□□□□□ -1.49
DEF1YKL054C IST1P53843 298 aaPredicted RBP5.76□□□□□ -1.49
DEF1YKL054C YDR109CQ04585 715 aa5.76□□□□□ -1.49
DEF1YKL054C PUS9Q12069 462 aa5.76□□□□□ -1.49
DEF1YKL054C MRH1Q12117 320 aaPredicted RBP5.76□□□□□ -1.49
DEF1YKL054C ATG31Q12421 196 aa5.76□□□□□ -1.49
DEF1YKL054C CFT1Q06632 1357 aaKnown RBP5.76□□□□□ -1.49
DEF1YKL054C GPH1P06738 902 aaKnown RBP5.76□□□□□ -1.49
DEF1YKL054C PDE2P06776 526 aa5.76□□□□□ -1.49
DEF1YKL054C ADE5,7P07244 802 aaKnown RBP5.76□□□□□ -1.49
DEF1YKL054C POL30P15873 258 aaKnown RBP5.76□□□□□ -1.49
DEF1YKL054C SGV1P23293 657 aaKnown RBP5.76□□□□□ -1.49
DEF1YKL054C DAL2P25335 343 aa5.76□□□□□ -1.49
DEF1YKL054C GID7P25569 745 aa5.76□□□□□ -1.49
DEF1YKL054C ELF1P36053 145 aa5.76□□□□□ -1.49
DEF1YKL054C TSC10P38342 320 aa5.76□□□□□ -1.49
DEF1YKL054C HSH155P49955 971 aaKnown RBP5.76□□□□□ -1.49
DEF1YKL054C VOA1P53262 265 aa5.76□□□□□ -1.49
DEF1YKL054C MED7Q08278 222 aa5.76□□□□□ -1.49
DEF1YKL054C RPS10AQ08745 105 aaPredicted RBP5.76□□□□□ -1.49
DEF1YKL054C YBL111CQ3E7Y5 667 aa5.76□□□□□ -1.49
DEF1YKL054C ADE4P04046 510 aaKnown RBP5.75□□□□□ -1.49
DEF1YKL054C ARG4P04076 463 aaPredicted RBP5.75□□□□□ -1.49
DEF1YKL054C PEP5P12868 1029 aa5.75□□□□□ -1.49
DEF1YKL054C THR4P16120 514 aaKnown RBP5.75□□□□□ -1.49
DEF1YKL054C RPI1P23250 407 aaKnown RBP5.75□□□□□ -1.49
DEF1YKL054C RAD23P32628 398 aaKnown RBP5.75□□□□□ -1.49
DEF1YKL054C YBR053CP38235 358 aa5.75□□□□□ -1.49
DEF1YKL054C MBB1P39534 108 aa5.75□□□□□ -1.49
DEF1YKL054C YRB2P40517 327 aa5.75□□□□□ -1.49
DEF1YKL054C RPS10BP46784 105 aaKnown RBP5.75□□□□□ -1.49
DEF1YKL054C GTF1P53260 183 aaPredicted RBP5.75□□□□□ -1.49
DEF1YKL054C UBP16Q02863 499 aa5.75□□□□□ -1.49
DEF1YKL054C HXT2P23585 541 aa5.75□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 24.4 ms