RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	GCD2	P12754	651 aa	Predicted RBP	4.63	□□□□□ -1.67
VPS29	YHR012W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
VPS29	YHR012W	HXT4	P32467	576 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	YME1	P32795	747 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	ETR1	P38071	380 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	MOH1	P38191	138 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	SPP381	P38282	291 aa	Predicted RBP	4.63	□□□□□ -1.67
VPS29	YHR012W	IFA38	P38286	347 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	HXT6	P39003	570 aa	Known RBP	4.63	□□□□□ -1.67
VPS29	YHR012W	HXT7	P39004	570 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	VPS52	P39904	641 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	PAC11	P40960	533 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	CEP3	P40969	608 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	VMA13	P41807	478 aa	Known RBP	4.63	□□□□□ -1.67
VPS29	YHR012W	CUP9	P41817	306 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	YRB1	P41920	201 aa	Known RBP	4.63	□□□□□ -1.67
VPS29	YHR012W	TIM54	P47045	478 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	SDT1	P53078	280 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	YGR053C	P53234	283 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	MUS81	Q04149	632 aa	Predicted RBP	4.63	□□□□□ -1.67
VPS29	YHR012W	YDR338C	Q05497	695 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	REH1	Q06709	432 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	YET3	Q07451	203 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	ENT4	Q07872	247 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	VHS3	Q08438	674 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	YPR022C	Q12139	1133 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	UPC2	Q12151	913 aa		4.63	□□□□□ -1.67
VPS29	YHR012W	SLH1	P53327	1967 aa	Known RBP	4.63	□□□□□ -1.67
VPS29	YHR012W	COR1	P07256	457 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	RPB10	P22139	70 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	SEC14	P24280	304 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	ADH7	P25377	361 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	CHA1	P25379	360 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	TAH1	P25638	111 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	YCR090C	P25654	182 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	NAM9	P27929	486 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	FAA1	P30624	700 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	MLS1	P30952	554 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	YMC1	P32331	307 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	DCG1	P32460	244 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	COX13	P32799	129 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
VPS29	YHR012W	VPS21	P36017	210 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	RRP14	P36080	434 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	LAS1	P36146	502 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	OMA1	P36163	345 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	UTP9	P38882	575 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	DSS1	P39112	969 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	CAB2	P40506	365 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	YNL320W	P42840	284 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	LCL3	P53153	274 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	LSC1	P53598	329 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	VPS60	Q03390	229 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	CSN9	Q03981	162 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	RAD34	Q06665	692 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	NOP6	Q07623	225 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	NBA1	Q08229	501 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	MMT2	Q08970	484 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	NUR1	Q12066	484 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	CHS5	Q12114	671 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	YOR342C	Q12182	319 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	WTM2	Q12206	467 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	NOP14	Q99207	810 aa	Known RBP	4.62	□□□□□ -1.67
VPS29	YHR012W	Q0010	Q9ZZX9	128 aa		4.62	□□□□□ -1.67
VPS29	YHR012W	PET111	P08468	800 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	RPB2	P08518	1224 aa	Known RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	DAT1	P13483	248 aa	Known RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	MSS116	P15424	664 aa	Known RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	GUK1	P15454	187 aa	Known RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	GLK1	P17709	500 aa	Known RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	PHA2	P32452	334 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	PET127	P32606	800 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	SUI1	P32911	108 aa	Known RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	NUP120	P35729	1037 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	ASK1	P35734	292 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	RPS27A	P35997	82 aa	Known RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	MCM7	P38132	845 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	ALG3	P38179	458 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	YBR062C	P38239	180 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	YBR071W	P38243	211 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	BMT2	P38278	337 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	RPS27B	P38711	82 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	SPC97	P38863	823 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	YEL020C	P39994	560 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	NEO1	P40527	1151 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	JHD2	P47156	728 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	TIS11	P47977	285 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	OCA1	P50946	238 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	HOL1	P53389	586 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	IST1	P53843	298 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS29	YHR012W	IBD2	P53892	351 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	SEC10	Q06245	871 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	YDL218W	Q07629	317 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	NMD4	Q12129	218 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	NSI1	Q12457	570 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	RMP1	Q12530	201 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	YMR030W-A	Q3E760	96 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	TY4A-H	Q6Q5P6	413 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	YOR032W-A	Q8TGS1	66 aa		4.61	□□□□□ -1.67
VPS29	YHR012W	UTP20	P35194	2493 aa	Known RBP	4.61	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms