RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC9	YGR009C	UGA1	P17649	471 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	PET9	P18239	318 aa	Known RBP	4.76	□□□□□ -1.65
SEC9	YGR009C	ERV1	P27882	189 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	BEM1	P29366	551 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	MNS1	P32906	549 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	RPS1A	P33442	255 aa	Known RBP	4.76	□□□□□ -1.65
SEC9	YGR009C	DOA1	P36037	715 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	RMD6	P39975	231 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	SHR5	P41912	237 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	TOS3	P43637	560 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	JHD2	P47156	728 aa	Predicted RBP	4.76	□□□□□ -1.65
SEC9	YGR009C	TAF6	P53040	516 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	YGL185C	P53100	379 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	GPI1	P53306	609 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	YPL080C	Q02826	108 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	RIM13	Q03792	727 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	AIM33	Q04516	312 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	ADY4	Q05955	493 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	NEJ1	Q06148	342 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	CTI6	Q08923	506 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	LEA1	Q08963	238 aa	Predicted RBP	4.76	□□□□□ -1.65
SEC9	YGR009C	RCN2	Q12044	265 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	LYS21	Q12122	440 aa	Known RBP	4.76	□□□□□ -1.65
SEC9	YGR009C	DCS2	Q12123	353 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	ZRT2	Q12436	422 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	CTF3	Q12748	733 aa		4.76	□□□□□ -1.65
SEC9	YGR009C	TFB5	Q3E7C1	72 aa	Predicted RBP	4.76	□□□□□ -1.65
SEC9	YGR009C	SEC53	P07283	254 aa	Known RBP	4.75	□□□□□ -1.65
SEC9	YGR009C	NHP6B	P11633	99 aa	Known RBP	4.75	□□□□□ -1.65
SEC9	YGR009C	SNA3	P14359	133 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	IDH2	P28241	369 aa	Known RBP	4.75	□□□□□ -1.65
SEC9	YGR009C	CAP1	P28495	268 aa	Known RBP	4.75	□□□□□ -1.65
SEC9	YGR009C	PDB1	P32473	366 aa	Known RBP	4.75	□□□□□ -1.65
SEC9	YGR009C	DUG2	P38149	878 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	SLI15	P38283	698 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	MSC7	P38694	644 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	SER3	P40054	469 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	PUG1	P40100	303 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	YMR147W	P40218	223 aa	Known RBP	4.75	□□□□□ -1.65
SEC9	YGR009C	OYE3	P41816	400 aa	Predicted RBP	4.75	□□□□□ -1.65
SEC9	YGR009C	YAR1	P46683	200 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	COS6	P53344	381 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	YIP3	P53633	176 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	APM1	Q00776	475 aa	Predicted RBP	4.75	□□□□□ -1.65
SEC9	YGR009C	ARL3	Q02804	198 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	PLM2	Q04383	521 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	LDB18	Q07887	179 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	XYL2	Q07993	356 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	DCN1	Q12395	269 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	TSC13	Q99190	310 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	PET20	Q99373	253 aa		4.75	□□□□□ -1.65
SEC9	YGR009C	AI1	P03875	834 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	ADE5,7	P07244	802 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	ILV2	P07342	687 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	MRPL33	P20084	86 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	AMS1	P22855	1083 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	CNB1	P25296	175 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	LAC1	P28496	418 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	TFC1	P32367	649 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	SPS19	P32573	292 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	SPR1	P32603	445 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	OAF3	P36023	863 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	APT2	P36973	181 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	ECM8	P38246	354 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	TDA11	P38854	504 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	CCT6	P39079	546 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	VRG4	P40107	337 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	YGR201C	P42936	225 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	YJL163C	P46996	555 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	YJR149W	P47177	404 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	NBP1	P52919	319 aa	Predicted RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	YGL036W	P53185	909 aa	Predicted RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	NQM1	P53228	333 aa	Predicted RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	ECM9	Q02202	377 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	RQC1	Q05468	723 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	OPT2	Q06593	877 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	BSC6	Q08280	497 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	RRP40	Q08285	240 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	AIM41	Q12032	185 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	CWC2	Q12046	339 aa	Predicted RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	NMD4	Q12129	218 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	HBN1	Q96VH4	193 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	RPL24A	P04449	155 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	CHO2	P05374	869 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	MEK1	P24719	497 aa	Predicted RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	CHA1	P25379	360 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	DCC1	P25559	380 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	ATG22	P25568	528 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	PPA2	P28239	310 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	PRO3	P32263	286 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	ISF1	P32488	338 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	ABD1	P32783	436 aa	Predicted RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	YCR087C-A	P37263	153 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	ECM31	P38122	312 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	LDH1	P38139	375 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	ECM13	P38195	257 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	YBR259W	P38338	688 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	PRS2	P38620	318 aa	Known RBP	4.74	□□□□□ -1.65
SEC9	YGR009C	PTC7	P38797	343 aa		4.74	□□□□□ -1.65
SEC9	YGR009C	NVJ1	P38881	321 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms