RNA–Protein interactions for RNA: YER049W

TPA1, Transcript of Poly(rA)-binding protein, yeast

Gene TPA1, Length 1,935 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPA1	YER049W	EMC1	P25574	760 aa		4.04	□□□□□ -1.76
TPA1	YER049W	CIN8	P27895	1000 aa		4.04	□□□□□ -1.76
TPA1	YER049W	CAF4	P36130	643 aa		4.04	□□□□□ -1.76
TPA1	YER049W	SPC34	P36131	295 aa		4.04	□□□□□ -1.76
TPA1	YER049W	YKR073C	P36153	106 aa		4.04	□□□□□ -1.76
TPA1	YER049W	FLR1	P38124	548 aa		4.04	□□□□□ -1.76
TPA1	YER049W	FUI1	P38196	639 aa		4.04	□□□□□ -1.76
TPA1	YER049W	SWD1	P39706	426 aa		4.04	□□□□□ -1.76
TPA1	YER049W	PMT3	P47190	753 aa		4.04	□□□□□ -1.76
TPA1	YER049W	ARE2	P53629	642 aa	Known RBP	4.04	□□□□□ -1.76
TPA1	YER049W	YNR068C	P53754	272 aa		4.04	□□□□□ -1.76
TPA1	YER049W	TRS31	Q03337	283 aa		4.04	□□□□□ -1.76
TPA1	YER049W	MSC2	Q03455	724 aa		4.04	□□□□□ -1.76
TPA1	YER049W	PLP1	Q04004	230 aa		4.04	□□□□□ -1.76
TPA1	YER049W	SIZ1	Q04195	904 aa		4.04	□□□□□ -1.76
TPA1	YER049W	ARA2	Q04212	335 aa		4.04	□□□□□ -1.76
TPA1	YER049W	RAD33	Q04231	177 aa		4.04	□□□□□ -1.76
TPA1	YER049W	PEX12	Q04370	399 aa		4.04	□□□□□ -1.76
TPA1	YER049W	YDR109C	Q04585	715 aa		4.04	□□□□□ -1.76
TPA1	YER049W	GPI11	Q06636	219 aa		4.04	□□□□□ -1.76
TPA1	YER049W	DTD1	Q07648	150 aa	Known RBP	4.04	□□□□□ -1.76
TPA1	YER049W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
TPA1	YER049W	NOP12	Q08208	459 aa	Known RBP	4.04	□□□□□ -1.76
TPA1	YER049W	MED2	Q12124	431 aa		4.04	□□□□□ -1.76
TPA1	YER049W	YPL119C-A	Q3E751	87 aa		4.04	□□□□□ -1.76
TPA1	YER049W	THP2	O13539	261 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	HEM2	P05373	342 aa		4.03	□□□□□ -1.76
TPA1	YER049W	NFT1	P0CE68	1218 aa		4.03	□□□□□ -1.76
TPA1	YER049W	APE1	P14904	514 aa		4.03	□□□□□ -1.76
TPA1	YER049W	MET16	P18408	261 aa	Predicted RBP	4.03	□□□□□ -1.76
TPA1	YER049W	KGD1	P20967	1014 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	PUP3	P25451	205 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	YCL002C	P25565	263 aa		4.03	□□□□□ -1.76
TPA1	YER049W	UBC8	P28263	218 aa		4.03	□□□□□ -1.76
TPA1	YER049W	PRP21	P32524	280 aa	Predicted RBP	4.03	□□□□□ -1.76
TPA1	YER049W	PTM1	P32857	523 aa		4.03	□□□□□ -1.76
TPA1	YER049W	MRPL6	P32904	214 aa		4.03	□□□□□ -1.76
TPA1	YER049W	KSP1	P38691	1029 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	STB5	P38699	743 aa		4.03	□□□□□ -1.76
TPA1	YER049W	RIM4	P38741	713 aa		4.03	□□□□□ -1.76
TPA1	YER049W	SOP4	P39543	234 aa	Predicted RBP	4.03	□□□□□ -1.76
TPA1	YER049W	IMD3	P50095	523 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	BOL2	P53082	120 aa		4.03	□□□□□ -1.76
TPA1	YER049W	MET13	P53128	600 aa		4.03	□□□□□ -1.76
TPA1	YER049W	TWF1	P53250	332 aa		4.03	□□□□□ -1.76
TPA1	YER049W	BRE5	P53741	515 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	IBD2	P53892	351 aa		4.03	□□□□□ -1.76
TPA1	YER049W	CEG1	Q01159	459 aa	Predicted RBP	4.03	□□□□□ -1.76
TPA1	YER049W	RSC9	Q03124	581 aa		4.03	□□□□□ -1.76
TPA1	YER049W	LRS4	Q04087	347 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	YDR514C	Q04408	483 aa		4.03	□□□□□ -1.76
TPA1	YER049W	BLS1	Q06071	122 aa		4.03	□□□□□ -1.76
TPA1	YER049W	SWC7	Q06707	132 aa		4.03	□□□□□ -1.76
TPA1	YER049W	GPB1	Q08886	897 aa		4.03	□□□□□ -1.76
TPA1	YER049W	TY3A-G	Q12173	290 aa		4.03	□□□□□ -1.76
TPA1	YER049W	UBX3	Q12229	455 aa		4.03	□□□□□ -1.76
TPA1	YER049W	AHA1	Q12449	350 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	NSI1	Q12457	570 aa		4.03	□□□□□ -1.76
TPA1	YER049W	TY3A-I	Q99219	290 aa		4.03	□□□□□ -1.76
TPA1	YER049W	COX5A	P00424	153 aa		4.03	□□□□□ -1.76
TPA1	YER049W	ADE4	P04046	510 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	GPH1	P06738	902 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	MAS2	P11914	482 aa		4.03	□□□□□ -1.76
TPA1	YER049W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
TPA1	YER049W	RPB4	P20433	221 aa	Predicted RBP	4.03	□□□□□ -1.76
TPA1	YER049W	BEM1	P29366	551 aa		4.03	□□□□□ -1.76
TPA1	YER049W	MSS51	P32335	436 aa		4.03	□□□□□ -1.76
TPA1	YER049W	CLG1	P35190	452 aa		4.03	□□□□□ -1.76
TPA1	YER049W	MRPL17	P36528	281 aa		4.03	□□□□□ -1.76
TPA1	YER049W	RIB1	P38066	345 aa		4.03	□□□□□ -1.76
TPA1	YER049W	SHE3	P38272	425 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	YLF2	P38746	405 aa		4.03	□□□□□ -1.76
TPA1	YER049W	VMA22	P38784	181 aa		4.03	□□□□□ -1.76
TPA1	YER049W	YHR131C	P38835	850 aa		4.03	□□□□□ -1.76
TPA1	YER049W	EDC3	P39998	551 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	FCY21	P40039	528 aa		4.03	□□□□□ -1.76
TPA1	YER049W	JLP2	P40206	208 aa		4.03	□□□□□ -1.76
TPA1	YER049W	GCD10	P41814	478 aa		4.03	□□□□□ -1.76
TPA1	YER049W	SNG1	P46950	547 aa		4.03	□□□□□ -1.76
TPA1	YER049W	YPL107W	Q02873	248 aa		4.03	□□□□□ -1.76
TPA1	YER049W	NHP10	Q03435	203 aa		4.03	□□□□□ -1.76
TPA1	YER049W	ARP10	Q04549	284 aa		4.03	□□□□□ -1.76
TPA1	YER049W	TSR2	Q06672	205 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	VAM6	Q07468	1049 aa		4.03	□□□□□ -1.76
TPA1	YER049W	NGL1	Q08213	363 aa	Known RBP	4.03	□□□□□ -1.76
TPA1	YER049W	DDC1	Q08949	612 aa		4.03	□□□□□ -1.76
TPA1	YER049W	YLR049C	Q12110	428 aa		4.03	□□□□□ -1.76
TPA1	YER049W	HUA2	Q12134	243 aa		4.03	□□□□□ -1.76
TPA1	YER049W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
TPA1	YER049W	JLP1	Q12358	412 aa		4.03	□□□□□ -1.76
TPA1	YER049W	TRM10	Q12400	293 aa		4.03	□□□□□ -1.76
TPA1	YER049W	APM4	Q99186	491 aa		4.03	□□□□□ -1.76
TPA1	YER049W	RIB3	Q99258	208 aa		4.03	□□□□□ -1.76
TPA1	YER049W	ARG3	P05150	338 aa		4.02	□□□□□ -1.77
TPA1	YER049W	RAD7	P06779	565 aa		4.02	□□□□□ -1.77
TPA1	YER049W	HMG1	P12683	1054 aa		4.02	□□□□□ -1.77
TPA1	YER049W	POX1	P13711	748 aa		4.02	□□□□□ -1.77
TPA1	YER049W	RFA1	P22336	621 aa	Known RBP	4.02	□□□□□ -1.77
TPA1	YER049W	MIH1	P23748	554 aa		4.02	□□□□□ -1.77
TPA1	YER049W	YIH1	P25637	258 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 26.7 ms