RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	LRO1	P40345	661 aa		10.32	□□□□□ -0.76
VPS60	YDR486C	GAB1	P41733	394 aa		10.32	□□□□□ -0.76
VPS60	YDR486C	UPF3	P48412	387 aa	Known RBP	10.32	□□□□□ -0.76
VPS60	YDR486C	EGD1	Q02642	157 aa	Known RBP	10.32	□□□□□ -0.76
VPS60	YDR486C	RPM2	Q02773	1202 aa		10.32	□□□□□ -0.76
VPS60	YDR486C	MUS81	Q04149	632 aa	Predicted RBP	10.32	□□□□□ -0.76
VPS60	YDR486C	YOL159C	Q08300	171 aa		10.32	□□□□□ -0.76
VPS60	YDR486C	MUM3	Q08750	479 aa		10.32	□□□□□ -0.76
VPS60	YDR486C	ADF1	Q2V2Q1	113 aa		10.32	□□□□□ -0.76
VPS60	YDR486C	TY2A-LR1	P0C2J4	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-F	P0CX61	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-GR2	P0CX62	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TOP3	P13099	656 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	SLM5	P25345	492 aa	Known RBP	10.31	□□□□□ -0.76
VPS60	YDR486C	RNQ1	P25367	405 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-C	P25383	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	RGI1	P40043	161 aa	Predicted RBP	10.31	□□□□□ -0.76
VPS60	YDR486C	VRG4	P40107	337 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	LTP1	P40347	161 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	MNT3	P40549	630 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	YJL049W	P47048	450 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	MUP1	P50276	574 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	BIO3	P50277	480 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	ARE2	P53629	642 aa	Known RBP	10.31	□□□□□ -0.76
VPS60	YDR486C	ATP25	Q03153	612 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-DR2	Q03483	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	RAD33	Q04231	177 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	GYP1	Q08484	637 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-B	Q12260	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-OR2	Q12293	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	RPN6	Q12377	434 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-DR1	Q12392	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-OR1	Q12439	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	SNF8	Q12483	233 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	TY2A-DR3	Q99303	438 aa		10.31	□□□□□ -0.76
VPS60	YDR486C	ATP4	P05626	244 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	RAP1	P11938	827 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	GCD2	P12754	651 aa	Predicted RBP	10.3	□□□□□ -0.76
VPS60	YDR486C	ADE1	P27616	306 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	IDH2	P28241	369 aa	Known RBP	10.3	□□□□□ -0.76
VPS60	YDR486C	SIN4	P32259	974 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	TFC1	P32367	649 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	SEC17	P32602	292 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	NRP1	P32770	719 aa	Known RBP RIP-Chip data	10.3	□□□□□ -0.76	not detected
VPS60	YDR486C	CDC13	P32797	924 aa	Known RBP	10.3	□□□□□ -0.76
VPS60	YDR486C	SPO23	P33757	523 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	FMP46	P36141	133 aa	Known RBP	10.3	□□□□□ -0.76
VPS60	YDR486C	GLG1	P36143	616 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	FAD1	P38913	306 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	10.3	□□□□□ -0.76	not detected
VPS60	YDR486C	NOP9	P47077	666 aa	Known RBP	10.3	□□□□□ -0.76
VPS60	YDR486C	ILM1	P47155	203 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	GET1	P53192	235 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	ERP6	P53198	216 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	YNL033W	P53964	284 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	YNL019C	P53975	284 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	SPC2	Q04969	178 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	VPS74	Q06385	345 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	YPR022C	Q12139	1133 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	TY4A-H	Q6Q5P6	413 aa		10.3	□□□□□ -0.76
VPS60	YDR486C	UGA1	P17649	471 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	SYP1	P25623	870 aa	Known RBP	10.29	□□□□□ -0.76
VPS60	YDR486C	BUB3	P26449	341 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	DPH5	P32469	300 aa	Predicted RBP	10.29	□□□□□ -0.76
VPS60	YDR486C	NGG1	P32494	702 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	PET127	P32606	800 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	UTH1	P36135	365 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	PDX3	P38075	228 aa	Known RBP	10.29	□□□□□ -0.76
VPS60	YDR486C	TDP1	P38319	544 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	DIM1	P41819	318 aa	Known RBP	10.29	□□□□□ -0.76
VPS60	YDR486C	SDT1	P53078	280 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	SWF1	Q04629	336 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	YDL129W	Q07555	291 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	YOL131W	Q08270	108 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	MLH3	Q12083	715 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	RTK1	Q12100	620 aa	Predicted RBP	10.29	□□□□□ -0.76
VPS60	YDR486C	RUP1	Q12242	671 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	NTO1	Q12311	748 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	Q0010	Q9ZZX9	128 aa		10.29	□□□□□ -0.76
VPS60	YDR486C	THP2	O13539	261 aa	Known RBP	10.28	□□□□□ -0.76
VPS60	YDR486C	YPR096C	O13587	100 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	SNF5	P18480	905 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	RVS161	P25343	265 aa	Known RBP	10.28	□□□□□ -0.76
VPS60	YDR486C	AGP1	P25376	633 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	CDC5	P32562	705 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	SKN1	P33336	771 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	PEX6	P33760	1030 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	MRP8	P35719	219 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	APT2	P36973	181 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	MAD2	P40958	196 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	FHN1	P53279	174 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	GOR1	P53839	350 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	NAN1	Q02931	896 aa	Known RBP	10.28	□□□□□ -0.76
VPS60	YDR486C	DIN7	Q12086	430 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	GET4	Q12125	312 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	BMT6	Q12291	365 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	YDR262W	Q12331	272 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	RKM5	Q12367	367 aa		10.28	□□□□□ -0.76
VPS60	YDR486C	GAL7	P08431	366 aa		10.27	□□□□□ -0.77
VPS60	YDR486C	MSS18	P08593	268 aa		10.27	□□□□□ -0.77

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms